Microbiology of extremely acidic terrestrial volcanic ecosystems

Publicaciones

Methylacidimicrobium thermophilum AP8, a Novel Methane- and Hydrogen-Oxidizing Bacterium Isolated From Volcanic Soil on Pantelleria Island, Italy

Autores: Nunzia Picone, Pieter Blom, Anna J. Wallenius, Carmen Hogendoorn, Rob Mesman, Geert Cremers, Antonina L. Gagliano, Walter D’Alessandro, Paola Quatrini, Mike S. M. Jetten, Arjan Pol, Huub J. M. Op den Camp
Publicado en: Frontiers in Microbiology, Edición 12, 2021, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2021.637762

Methanol production by Methylacidiphilum fumariolicum SolV under different growth conditions

Autores: Carmen Hogendoorn, Arjan Pol, Guylaine H. L. Nuijten, Huub J. M. Op den Camp
Publicado en: Applied and Environmental Microbiology, 2020, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1128/aem.01188-20

Nutrient Limitation Causes Differential Expression of Transport- and Metabolism Genes in the Compartmentalized Anammox Bacterium Kuenenia stuttgartiensis

Autores: Marjan J. Smeulders, Stijn H. Peeters, Theo van Alen, Daan de Bruijckere, Guylaine H. L. Nuijten, Huub J. M. op den Camp, Mike S. M. Jetten, Laura van Niftrik
Publicado en: Frontiers in Microbiology, Edición 11, 2020, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2020.01959

The thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV oxidizes subatmospheric H2 with a high-affinity, membrane-associated [NiFe] hydrogenase

Autores: Rob A. Schmitz, Arjan Pol, Sepehr S. Mohammadi, Carmen Hogendoorn, Antonie H. van Gelder, Mike S. M. Jetten, Lena J. Daumann, Huub J. M. Op den Camp
Publicado en: The ISME Journal, Edición 14/5, 2020, Página(s) 1223-1232, ISSN 1751-7362
Editor: Nature Publishing Group
DOI: 10.1038/s41396-020-0609-3

Diversity of isoprene-degrading bacteria in phyllosphere and soil communities from a high isoprene-emitting environment: a Malaysian oil palm plantation

Autores: Ornella Carrión, Lisa Gibson, Dafydd M. O. Elias, Niall P. McNamara, Theo A. van Alen, Huub J. M. Op den Camp, Christina Vimala Supramaniam, Terry J. McGenity, J. Colin Murrell
Publicado en: Microbiome, Edición 8/1, 2020, ISSN 2049-2618
Editor: Springer Nature
DOI: 10.1186/s40168-020-00860-7

Key Physiology of a Nitrite-Dependent Methane-Oxidizing Enrichment Culture

Autores: Simon Guerrero-Cruz, Karin Stultiens, Maartje A. H. J. van Kessel, Wouter Versantvoort, Mike S. M. Jetten, Huub J. M. Op den Camp, Boran Kartal
Publicado en: Applied and Environmental Microbiology, Edición 85/8, 2019, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1128/aem.00124-19

Verrucomicrobial methanotrophs: ecophysiology of metabolically versatile acidophiles

Autores: Rob A Schmitz, Stijn H Peeters, Wouter Versantvoort, Nunzia Picone, Arjan Pol, Mike S M Jetten, Huub J M Op den Camp
Publicado en: FEMS Microbiology Reviews, 2021, ISSN 1574-6976
Editor: Oxford University Press
DOI: 10.1093/femsre/fuab007

Ammonia oxidation at pH 2.5 by a new gammaproteobacterial ammonia-oxidizing bacterium

Autores: Nunzia Picone, Arjan Pol, Rob Mesman, Maartje A. H. J. van Kessel, Geert Cremers, Antonie H. van Gelder, Theo A. van Alen, Mike S. M. Jetten, Sebastian Lücker, Huub J. M. Op den Camp
Publicado en: The ISME Journal, 2020, ISSN 1751-7362
Editor: Nature Publishing Group
DOI: 10.1038/s41396-020-00840-7

Draft Genome Sequences of Two Acidophilic, Mesophilic Verrucomicrobial Methanotrophs Contain Only One pmoCAB Operon

Autores: Geert Cremers, Arjan Pol, Mike S. M. Jetten, Huub J. M. Op den Camp
Publicado en: Microbiology Resource Announcements, Edición 9/16, 2020, ISSN 2576-098X
Editor: ASM
DOI: 10.1128/mra.00315-20

Characterization of a novel cytochrome c as the electron acceptor of XoxF-MDH in the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV

Autores: Wouter Versantvoort, Arjan Pol, Lena J. Daumann, James A. Larrabee, Aidan H. Strayer, Mike S.M. Jetten, Laura van Niftrik, Joachim Reimann, Huub J.M. Op den Camp
Publicado en: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Edición 1867/6, 2019, Página(s) 595-603, ISSN 1570-9639
Editor: Elsevier BV
DOI: 10.1016/j.bbapap.2019.04.001

Complete Genome Sequence of the Aerobic Facultative Methanotroph Methylocella tundrae Strain T4

Autores: Martine A. R. Kox, Muhammad Farhan Ul Haque, Theo A. van Alen, Andrew T. Crombie, Mike S. M. Jetten, Huub J. M. Op den Camp, Svetlana N. Dedysh, Maartje A. H. J. van Kessel, J. Colin Murrell
Publicado en: Microbiology Resource Announcements, Edición 8/20, 2019, ISSN 2576-098X
Editor: ASM
DOI: 10.1128/mra.00286-19

Hydrogen and Carbon Monoxide-Utilizing Kyrpidia spormannii Species From Pantelleria Island, Italy

Autores: Carmen Hogendoorn, Arjan Pol, Nunzia Picone, Geert Cremers, Theo A. van Alen, Antonina L. Gagliano, Mike S. M. Jetten, Walter D’Alessandro, Paola Quatrini, Huub J. M. Op den Camp
Publicado en: Frontiers in Microbiology, Edición 11, 2020, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2020.00951

Diversity, enrichment, and genomic potential of anaerobic methane- and ammonium-oxidizing microorganisms from a brewery wastewater treatment plant

Autores: Karin Stultiens, Maartje A.H.J. van Kessel, Jeroen Frank, Peter Fischer, Chris Pelzer, Theo A. van Alen, Boran Kartal, Huub J.M. Op den Camp, Mike S.M. Jetten
Publicado en: Applied Microbiology and Biotechnology, Edición 104/16, 2020, Página(s) 7201-7212, ISSN 0175-7598
Editor: Springer Verlag
DOI: 10.1007/s00253-020-10748-z

Structure of the 4-hydroxy-tetrahydrodipicolinate synthase from the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV and the phylogeny of the aminotransferase pathway

Autores: Rob A. Schmitz, Andreas Dietl, Melanie Müller, Tom Berben, Huub J. M. Op den Camp, Thomas R. M. Barends
Publicado en: Acta Crystallographica Section F Structural Biology Communications, Edición 76/5, 2020, Página(s) 199-208, ISSN 2053-230X
Editor: John Wiley and Sons Ltd
DOI: 10.1107/s2053230x20005294

More Than a Methanotroph: A Broader Substrate Spectrum for Methylacidiphilum fumariolicum SolV

Autores: Nunzia Picone, Sepehr S. Mohammadi, Annemiek C. Waajen, Theo A. van Alen, Mike S. M. Jetten, Arjan Pol, Huub J. M. Op den Camp
Publicado en: Frontiers in Microbiology, Edición 11, 2020, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2020.604485

Interactions between anaerobic ammonium- and methane-oxidizing microorganisms in a laboratory-scale sequencing batch reactor

Autores: Karin Stultiens, Simon Guerrero Cruz, Maartje A. H. J. van Kessel, Mike S. M. Jetten, Boran Kartal, Huub J. M. Op den Camp
Publicado en: Applied Microbiology and Biotechnology, Edición 103/16, 2019, Página(s) 6783-6795, ISSN 0175-7598
Editor: Springer Verlag
DOI: 10.1007/s00253-019-09976-9

Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in two sequential rapid sand filters

Autores: Lianna Poghosyan, Hanna Koch, Jeroen Frank, Maartje A.H.J. van Kessel, Geert Cremers, Theo van Alen, Mike S.M. Jetten, Huub J.M. Op den Camp, Sebastian Lücker
Publicado en: Water Research, Edición 185, 2020, Página(s) 116288, ISSN 0043-1354
Editor: Elsevier BV
DOI: 10.1016/j.watres.2020.116288

Understanding the chemistry of the artificial electron acceptors PES, PMS, DCPIP and Wurster’s Blue in methanol dehydrogenase assays

Autores: Bérénice Jahn, Niko S. W. Jonasson, Hurina Hu, Helena Singer, Arjan Pol, Nathan M. Good, Huub J. M. Op den Camp, N. Cecilia Martinez-Gomez, Lena J. Daumann
Publicado en: JBIC Journal of Biological Inorganic Chemistry, Edición 25/2, 2020, Página(s) 199-212, ISSN 0949-8257
Editor: Springer Verlag
DOI: 10.1007/s00775-020-01752-9

Resolving the complete genome of Kuenenia stuttgartiensis from a membrane bioreactor enrichment using Single-Molecule Real-Time sequencing

Autores: Jeroen Frank, Sebastian Lücker, Rolf H. A. M. Vossen, Mike S. M. Jetten, Richard J. Hall, Huub J. M. Op den Camp, Seyed Yahya Anvar
Publicado en: Scientific Reports, Edición 8/1, 2018, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-018-23053-7

Bioreactor virome metagenomics sequencing using DNA spike-ins

Autores: Geert Cremers, Lavinia Gambelli, Theo van Alen, Laura van Niftrik, Huub J.M. Op den Camp
Publicado en: PeerJ, Edición 6, 2018, Página(s) e4351, ISSN 2167-8359
Editor: PeerJ
DOI: 10.7717/peerj.4351

Mutations in SELENBP1, encoding a novel human methanethiol oxidase, cause extraoral halitosis

Autores: Arjan Pol, G. Herma Renkema, Albert Tangerman, Edwin G. Winkel, Udo F. Engelke, Arjan P. M. de Brouwer, Kent C. Lloyd, Renee S. Araiza, Lambert van den Heuvel, Heymut Omran, Heike Olbrich, Marijn Oude Elberink, Christian Gilissen, Richard J. Rodenburg, Jörn Oliver Sass, K. Otfried Schwab, Hendrik Schäfer, Hanka Venselaar, J. Silvia Sequeira, Huub J. M. Op den Camp, Ron A. Wevers
Publicado en: Nature Genetics, Edición 50/1, 2018, Página(s) 120-129, ISSN 1061-4036
Editor: Nature Publishing Group
DOI: 10.1038/s41588-017-0006-7

Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere

Autores: Özge Eyice, Nataliia Myronova, Arjan Pol, Ornella Carrión, Jonathan D Todd, Tom J Smith, Stephen J Gurman, Adam Cuthbertson, Sophie Mazard, Monique ASH Mennink-Kersten, Timothy DH Bugg, Karl Kristoffer Andersson, Andrew WB Johnston, Huub JM Op den Camp, Hendrik Schäfer
Publicado en: The ISME Journal, Edición 12/1, 2017, Página(s) 145-160, ISSN 1751-7362
Editor: Nature Publishing Group
DOI: 10.1038/ismej.2017.148

Facile Arsenazo III-Based Assay for Monitoring Rare Earth Element Depletion from Cultivation Media for Methanotrophic and Methylotrophic Bacteria

Autores: Carmen Hogendoorn, Paula Roszczenko-Jasińska, N. Cecilia Martinez-Gomez, Johann de Graaff, Patrick Grassl, Arjan Pol, Huub J. M. Op den Camp, Lena J. Daumann
Publicado en: Applied and Environmental Microbiology, Edición 84/8, 2018, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1128/AEM.02887-17

Ammonia Oxidation and Nitrite Reduction in the Verrucomicrobial Methanotroph Methylacidiphilum fumariolicum SolV

Autores: Sepehr S. Mohammadi, Arjan Pol, Theo van Alen, Mike S. M. Jetten, Huub J. M. Op den Camp
Publicado en: Frontiers in Microbiology, Edición 8, 2017, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2017.01901

Mimicking microbial interactions under nitrate-reducing conditions in an anoxic bioreactor: enrichment of novel Nitrospirae bacteria distantly related to Thermodesulfovibrio

Autores: Arslan Arshad, Paula Dalcin Martins, Jeroen Frank, Mike S. M. Jetten, Huub J. M. Op den Camp, Cornelia U. Welte
Publicado en: Environmental Microbiology, Edición 19/12, 2017, Página(s) 4965-4977, ISSN 1462-2912
Editor: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.13977

Autores: Bérénice Jahn, Arjan Pol, Henning Lumpe, Thomas R. M. Barends, Andreas Dietl, Carmen Hogendoorn, Huub J. M. Op den Camp, Lena J. Daumann
Publicado en: ChemBioChem, Edición 19/11, 2018, Página(s) 1147-1153, ISSN 1439-4227
Editor: John Wiley & Sons Ltd.
DOI: 10.1002/cbic.201800130

Impact of the lanthanide contraction on the activity of a lanthanide-dependent methanol dehydrogenase – a kinetic and DFT study

Autores: Henning Lumpe, Arjan Pol, Huub J. M. Op den Camp, Lena J. Daumann
Publicado en: Dalton Transactions, Edición 47/31, 2018, Página(s) 10463-10472, ISSN 1477-9226
Editor: Royal Society of Chemistry
DOI: 10.1039/c8dt01238e

Current perspectives on the application of N-damo and anammox in wastewater treatment

Autores: Maartje AHJ van Kessel, Karin Stultiens, Monique FW Slegers, Simon Guerrero Cruz, Mike SM Jetten, Boran Kartal, Huub JM Op den Camp
Publicado en: Current Opinion in Biotechnology, Edición 50, 2018, Página(s) 222-227, ISSN 0958-1669
Editor: Elsevier BV
DOI: 10.1016/j.copbio.2018.01.031

Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila

Autores: Wouter Versantvoort, Simon Guerrero-Cruz, Daan R. Speth, Jeroen Frank, Lavinia Gambelli, Geert Cremers, Theo van Alen, Mike S. M. Jetten, Boran Kartal, Huub J. M. Op den Camp, Joachim Reimann
Publicado en: Frontiers in Microbiology, Edición 9, 2018, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2018.01672

Community Composition and Ultrastructure of a Nitrate-Dependent Anaerobic Methane-Oxidizing Enrichment Culture

Autores: Lavinia Gambelli, Simon Guerrero-Cruz, Rob J. Mesman, Geert Cremers, Mike S. M. Jetten, Huub J. M. Op den Camp, Boran Kartal, Claudia Lueke, Laura van Niftrik
Publicado en: Applied and Environmental Microbiology, Edición 84/3, 2018, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1128/AEM.02186-17

Nitrate- and nitrite-dependent anaerobic oxidation of methane

Autores: Cornelia U. Welte, Olivia Rasigraf, Annika Vaksmaa, Wouter Versantvoort, Arslan Arshad, Huub J.M. Op den Camp, Mike S.M. Jetten, Claudia Lüke, Joachim Reimann
Publicado en: Environmental Microbiology Reports, Edición 8/6, 2016, Página(s) 941-955, ISSN 1758-2229
Editor: Wiley-Blackwell
DOI: 10.1111/1758-2229.12487

New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase

Autores: Bram Vekeman, Frederiek-Maarten Kerckhof, Geert Cremers, Paul de Vos, Peter Vandamme, Nico Boon, Huub J.M. Op den Camp, Kim Heylen
Publicado en: Environmental Microbiology, Edición 18/12, 2016, Página(s) 4523-4536, ISSN 1462-2912
Editor: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.13485

Ultrastructure and Viral Metagenome of Bacteriophages from an Anaerobic Methane Oxidizing Methylomirabilis Bioreactor Enrichment Culture

Autores: Lavinia Gambelli, Geert Cremers, Rob Mesman, Simon Guerrero, Bas E. Dutilh, Mike S. M. Jetten, Huub J. M. Op den Camp, Laura van Niftrik
Publicado en: Frontiers in Microbiology, Edición 7, 2016, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2016.01740

Methylacidiphilum fumariolicum SolV, a thermoacidophilic ‘Knallgas’ methanotroph with both an oxygen-sensitive and -insensitive hydrogenase

Autores: Sepehr Mohammadi, Arjan Pol, Theo A van Alen, Mike SM Jetten, Huub JM Op den Camp
Publicado en: The ISME Journal, Edición 11/4, 2016, Página(s) 945-958, ISSN 1751-7362
Editor: Nature Publishing Group
DOI: 10.1038/ismej.2016.171

Draft Genome Sequence of a Novel Methylobacterium brachiatum Strain Isolated from Human Skin

Autores: Geert Cremers, Angelique Kenyon, Niels Gubbels, Matthijs Jansen, Theo A. van Alen, Tom Berben, Huub J. M. Op den Camp
Publicado en: Microbiology Resource Announcements, Edición 9/50, 2020, ISSN 2576-098X
Editor: American Society for Microbiology
DOI: 10.1128/mra.01093-20

Response of the Anaerobic Methanotroph “ Candidatus Methanoperedens nitroreducens” to Oxygen Stress

Autores: Simon Guerrero-Cruz, Geert Cremers, Theo A. van Alen, Huub J. M. Op den Camp, Mike S. M. Jetten, Olivia Rasigraf, Annika Vaksmaa
Publicado en: Applied and Environmental Microbiology, Edición 84/24, 2018, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1128/aem.01832-18

Draft genome of a novel methanotrophic Methylobacter sp. from the volcanic soils of Pantelleria Island

Autores: Carmen Hogendoorn, Nunzia Picone, Femke van Hout, Sophie Vijverberg, Lianna Poghosyan, Theo A. van Alen, Jeroen Frank, Arjan Pol, Antonia L. Gagliano, Mike S. M. Jetten, Walter D’Alessandro, Paola Quatrini, Huub J. M. Op den Camp
Publicado en: Antonie van Leeuwenhoek, Edición 114/3, 2021, Página(s) 313-324, ISSN 0003-6072
Editor: Kluwer Academic Publishers
DOI: 10.1007/s10482-021-01525-7

Role of rare earth elements in methanol oxidation

Autores: Nunzia Picone, Huub JM Op den Camp
Publicado en: Current Opinion in Chemical Biology, Edición 49, 2019, Página(s) 39-44, ISSN 1367-5931
Editor: Elsevier BV
DOI: 10.1016/j.cbpa.2018.09.019

The Acidophilic Methanotroph Methylacidimicrobium tartarophylax 4AC Grows as Autotroph on H2 Under Microoxic Conditions

Autores: Sepehr S. Mohammadi, Rob A. Schmitz, Arjan Pol, Tom Berben, Mike S. M. Jetten, Huub J. M. Op den Camp
Publicado en: Frontiers in Microbiology, Edición 10, 2019, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2019.02352

Geothermal Gases Shape the Microbial Community of the Volcanic Soil of Pantelleria, Italy

Autores: Nunzia Picone, Carmen Hogendoorn, Geert Cremers, Lianna Poghosyan, Arjan Pol, Theo A. van Alen, Antonina L. Gagliano, Walter D’Alessandro, Paola Quatrini, Mike S. M. Jetten, Huub J. M. Op den Camp, Tom Berben
Publicado en: mSystems, Edición 5/6, 2020, Página(s) 1-17, ISSN 2379-5077
Editor: American Society for Microbiology
DOI: 10.1128/msystems.00517-20

Interactions of anaerobic ammonium oxidizers and sulfide-oxidizing bacteria in a substrate-limited model system mimicking the marine environment

Autores: Lina Russ, Theo A van Alen, Mike S M Jetten, Huub J M Op den Camp, Boran Kartal
Publicado en: FEMS Microbiology Ecology, Edición 95/9, 2019, ISSN 1574-6941
Editor: FEMS
DOI: 10.1093/femsec/fiz137

Electrocatalysis of a Europium‐Dependent Bacterial Methanol Dehydrogenase with Its Physiological Electron‐Acceptor Cytochrome c GJ

Autores: Palraj Kalimuthu, Lena J. Daumann, Arjan Pol, Huub J. M. Op den Camp, Paul V. Bernhardt
Publicado en: Chemistry – A European Journal, 2019, ISSN 0947-6539
Editor: John Wiley & Sons Ltd.
DOI: 10.1002/chem.201900525

Multiheme hydroxylamine oxidoreductases produce NO during ammonia oxidation in methanotrophs

Autores: Wouter Versantvoort, Arjan Pol, Mike S. M. Jetten, Laura van Niftrik, Joachim Reimann, Boran Kartal, Huub J. M. Op den Camp
Publicado en: Proceedings of the National Academy of Sciences, Edición 117/39, 2020, Página(s) 24459-24463, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.2011299117

Several ways one goal—methanogenesis from unconventional substrates

Autores: Julia M. Kurth, Huub J. M. Op den Camp, Cornelia U. Welte
Publicado en: Applied Microbiology and Biotechnology, Edición 104/16, 2020, Página(s) 6839-6854, ISSN 0175-7598
Editor: Springer Verlag
DOI: 10.1007/s00253-020-10724-7

Growth on Carbohydrates from Carbonaceous Meteorites Alters the Immunogenicity of Environment-Derived Bacterial Pathogens

Autores: Jorge Domínguez-Andrés, Marc Eleveld, Georgios Renieris, Thomas J. Boltje, Rob J. Mesman, Laura van Niftrik, Sam J. Moons, Petra Rettberg, Jos W.M. van der Meer, Evangelos J. Giamarellos-Bourboulis, Huub J.M. Op den Camp, Marien I. de Jonge, Mihai G. Netea
Publicado en: Astrobiology, 2020, ISSN 1531-1074
Editor: Mary Ann Liebert Inc.
DOI: 10.1089/ast.2019.2173

Autotrophic microorganisms in acidic volcanic ecosystems

Autores: Carmen Hogendoorn
Publicado en: 2020
Editor: Ridderprint

Novel methane- and ammonia-oxidizing microorganisms from acidic environments

Autores: Nunzia Picone
Publicado en: 2020
Editor: Proefschriftmaken.nl

One-carbon and hydrogen metabolsim of acidophilic verrucomicrobial methanotrophs

Autores: Seyed Sepehr Mohammadi
Publicado en: 2017, ISBN 978-94-028-0468-3
Editor: Ipskamp Printing

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