Metagenome and transcriptome of the six most promising microbiomes
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D2.3 provides metagenome and (SIP)-transcriptome datasets of six most promising microbiomes (T2.2, T2.3) and this information will be used to select the best microbiomes for the directed evolution (T2.5).
Lists of microbiome taxonomic diversity
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D2.1 Provides microbiome datasets (based on 16S rRNA analysis) enriched with analytical data (pollutant concentration data and degradation intermediates, redox parameters) of polluted field sites at the start of the remediation (T2.1), and from the pilots (T5.4). The data will be used as input for the prediction tool in WP4.
List of pollutant-degrading bacteria and their functional genes
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Provides a list of pollutant-degrading, and pollutant-tolerant bacteria isolated from enrichment cultures, microcosms (T2.2) and trapping devices (T2.3). The functional potential and genome sequences of a selection of these bacteria will be determined (WP3) and their safety assessed (WP5). Promising strains will be combined to generate artificial microbiomes for evolution experiments (T2.5).