Big Data for Medical Analytics

Resultado final

Report on validation of pilots in Healthcare Industrialization (KPI tracking)
Report on validation of pilots in Oncology (KPI tracking)

Report on validation of pilots in Oncology (KPI tracking)

Three causal models which identify variables and causal relationships that prohibit and enable the use of Big data technology and a workshop to validate and strengthen the model.
Country specific infographics that summarize the relevant regulations for Big data technologies in the healthcare sector
Report on the results from Trial for pilots in Oncology
Report on validation of pilots in Population Health (KPI tracking)
Dissemination procedures
Report on the results from Trial for pilots in Population Health
Initial prototypes of specific components for all BigMedilytics pilots (software)
Report on the results from Trial for pilots in Healthcare Industrialization
Intermediate report on dissemination activities
Communication plan and tools
Material prepared for the workshops and final conclusions
Updated prototypes of specific components for all BigMedilytics pilots (software)
Final report and outreach and dissemination activities
Statistical model to measure the increase of productivity (at least 20%) including a workshop with all the pilot partners to validate the model.
Website portal
A tool to develop a plan of action that is consistent with the business strategy for future pilots.

Combining the output and providing guidance for different kinds of stakeholders on (i) Health policy, (ii) Business models and (iii) Technology components (referred to as the BigMedilytics Blueprint) and privacy, legal and ethical aspects.

Final implementations of specific components for all BigMedilytics pilots (software)
T0 base line measurement of the KPIs

Publicaciones

Private Hospital Workflow Optimization via Secure k-Means Clustering

Autores: Gabriele Spini, Maran van Heesch, Thijs Veugen, Supriyo Chatterjea
Publicado en: Journal of Medical Systems, Edición 44/1, 2020, ISSN 0148-5598
Editor: Kluwer Academic/Plenum Publishers
DOI: 10.1007/s10916-019-1473-4

Privacy-preserving dataset combination and Lasso regression for healthcare predictions

Autores: Marie Beth van Egmond, Gabriele Spini, Onno van der Galien, Arne IJpma, Thijs Veugen, Wessel Kraaij, Alex Sangers, Thomas Rooijakkers, Peter Langenkamp, Bart Kamphorst, Natasja van de L’Isle, Milena Kooij-Janic
Publicado en: BMC Medical Informatics and Decision Making, Edición 21/1, 2021, ISSN 1472-6947
Editor: BioMed Central
DOI: 10.1186/s12911-021-01582-y

TBase - an Integrated Electronic Health Record and Research Database for Kidney Transplant Recipients

Autores: Danilo Schmidt, Bilgin Osmanodja, Matthias Pfefferkorn, Verena Graf, Dirk Raschke, Wiebke Duettmann, Marcel G. Naik, Carolin J. Gethmann, Manuel Mayrdorfer, Fabian Halleck, Lutz Liefeldt, Petra Glander, Oliver Staeck, Michael Mallach, Martin Peuker, Klemens Budde
Publicado en: Journal of Visualized Experiments, Edición 170, 2021, ISSN 1940-087X
Editor: MYJoVE Corporation
DOI: 10.3791/61971

Impact of Acute Hemoglobin Falls in Heart Failure Patients: A Population Study

Autores: Cristina Lopez, Jose Luis Holgado, Antonio Fernandez, Inmaculada Sauri, Ruth Uso, Jose Luis Trillo, Sara Vela, Carlos Bea, Julio Nuñez, Ana Ferrer, Javier Gamez, Adrian Ruiz, Josep Redon
Publicado en: Journal of Clinical Medicine, Edición 9/6, 2020, Página(s) 1869, ISSN 2077-0383
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/jcm9061869

Integrating Speculation Detection and Deep Learning to Extract Lung Cancer Diagnosis from Clinical Notes

Autores: Oswaldo Solarte Pabón, Maria Torrente, Mariano Provencio, Alejandro Rodríguez-Gonzalez, Ernestina Menasalvas
Publicado en: Applied Sciences, Edición 11/2, 2021, Página(s) 865, ISSN 2076-3417
Editor: MDPI
DOI: 10.3390/app11020865

Trust, but Verify: Informed Consent, AI Technologies, and Public Health Emergencies

Autores: Brian Pickering
Publicado en: Future Internet, Edición 13/5, 2021, Página(s) 132, ISSN 1999-5903
Editor: Future Internet
DOI: 10.3390/fi13050132

Impact of sex differences in co‐morbidities and medication adherence on outcome in 25 776 heart failure patients

Autores: Muhammed T. Gürgöze, Onno P. Galiën, Marlou A.M. Limpens, Stefan Roest, René C. Hoekstra, Arne S. IJpma, Jasper J. Brugts, Olivier C. Manintveld, Eric Boersma
Publicado en: ESC Heart Failure, Edición 8/1, 2021, Página(s) 63-73, ISSN 2055-5822
Editor: John Wiley & Sons Ltd
DOI: 10.1002/ehf2.13113

eHealth in transplantation

Autores: Wiebke Duettmann, Marcel G. Naik, Bianca Zukunft, Bilgin Osmonodja, Friederike Bachmann, Mira Choi, Roland Roller, Manuel Mayrdorfer, Fabian Halleck, Danilo Schmidt, Klemens Budde
Publicado en: Transplant International, Edición 34/1, 2021, Página(s) 16-26, ISSN 0934-0874
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tri.13778

Understanding the Uptake of Big Data in Health Care: Protocol for a Multinational Mixed-Methods Study

Autores: Rik Wehrens, Vikrant Sihag, Sandra Sülz, Hilco van Elten, Erik van Raaij, Antoinette de Bont, Anne Marie Weggelaar-Jansen
Publicado en: JMIR Research Protocols, Edición 9/10, 2020, Página(s) e16779, ISSN 1929-0748
Editor: JMIR
DOI: 10.2196/16779

Heart failure and promotion of physical activity before and after cardiac rehabilitation (HF‐aPProACH): a study protocol

Autores: Marlou A.M. Limpens, Muhammed T. Gürgöze, Mattie J. Lenzen, Stefan Roest, Trudy Voortman, Maryam Kavousi, Nienke Hoeve, Madoka Sunamura, Iris Uijl, Peter J. Spek, Jasper J. Brugts, Olivier C. Manintveld, Arne S. IJpma, Eric Boersma
Publicado en: ESC Heart Failure, 2021, ISSN 2055-5822
Editor: Wiley Online Library
DOI: 10.1002/ehf2.13505

Digital Home-Monitoring of Patients after Kidney Transplantation: The MACCS Platform

Autores: Wiebke Duettmann, Marcel G. Naik, Danilo Schmidt, Matthias Pfefferkorn, Matthias Kurz, Verena Graf, Andrea Kreichgauer, Severin Hoegl, Max Haenska, Tim Gielsdorf, Tillmann Breitenstein, Bilgin Osmanodja, Petra Glander, Jannis Bakker, Manuel Mayrdorfer, Carolin J. Gethmann, Friederike Bachmann, Mira Choi, Eva Schrezenmeier, Bianca Zukunft, Fabian Halleck, Klemens Budde
Publicado en: Journal of Visualized Experiments, Edición 170, 2021, ISSN 1940-087X
Editor: MYJoVE Corporation
DOI: 10.3791/61899

Acute kidney injury in heart failure: a population study

Autores: Jose Luis Holgado, Cristina Lopez, Antonio Fernandez, Inmaculada Sauri, Ruth Uso, Jose Luis Trillo, Sara Vela, Julio Nuñez, Josep Redon, Adrian Ruiz
Publicado en: ESC Heart Failure, 2020, ISSN 2055-5822
Editor: John Wiley & Sons Ltd on behalf of the European Society of Cardiology
DOI: 10.1002/ehf2.12595

Radiomics for predicting response to neoadjuvant chemotherapy treatment in breast cancer

Autores: Simona Rabinovici-Cohen, Tal Tlusty, Ami Abutbul, Kari Antila, Xose Fernandez, Beatriz Grandal Rejo, Efrat Hexter, Oliver Hijano-Cubelos, Abed Khateeb, Juha Pajula, Shaked Perek
Publicado en: Medical Imaging 2020: Imaging Informatics for Healthcare, Research, and Applications, 2020, Página(s) 45, ISBN 9781510634046
Editor: SPIE
DOI: 10.1117/12.2551374

Fuzzy Inference System for Risk Evaluation in Gestational Diabetes Mellitus

Autores: Carlos Salort Sanchez, Suzanne Smyth, Elizabeth Tully, Joanna Griffin, Luke Heaphy, Niamh Redmond, Fionnuala Breathnach, Jan Baumbach, Cristian Axenie
Publicado en: 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE), 2019, Página(s) 947-952, ISBN 978-1-7281-4617-1
Editor: IEEE
DOI: 10.1109/bibe.2019.00177

Exploring Diachronic Changes of Biomedical Knowledge using Distributed Concept Representations

Autores: Gaurav Vashisth, Jan-Niklas Voigt-Antons, Michael Mikhailov, Roland Roller
Publicado en: Proceedings of the 18th BioNLP Workshop and Shared Task, 2019, Página(s) 348-358
Editor: Association for Computational Linguistics
DOI: 10.18653/v1/w19-5037

MoRTy: Unsupervised Learning of Task-specialized Word Embeddings by Autoencoding

Autores: Nils Rethmeier, Barbara Plank
Publicado en: Proceedings of the 4th Workshop on Representation Learning for NLP (RepL4NLP-2019), 2019, Página(s) 49-54
Editor: Association for Computational Linguistics
DOI: 10.18653/v1/w19-4307

Enabling analytics on sensitive medical data with secure multi-party computation

Autores: Veeningen, Meilof; Chatterjea, Supriyo; Horváth, Anna Zsófia; Spindler, Gerald; Boersma, Eric; Spek, Peter; Galiën, Onno; Gutteling, Job; Kraaij, Wessel; Veugen, Thijs
Publicado en: Edición 2, 2018
Editor: European Federation for Medical Informatics (EFMI) and IOS Press
DOI: 10.3233/978-1-61499-852-5-76

Deep Learning in Information Security

Autores: Thaler, Stefan; Menkovski, Vlado; Petkovic, Milan
Publicado en: Edición 1, 2018
Editor: ICLR 2019

Coping with the general data protection regulation; anonymization through multi-party computation technology

Autores: Wouter van Haaften / Alex Sangers / Tom van Engers / Somayeh Djafari
Publicado en: International Legal Informatics Symposium 2020 (IRIS2020), Edición 29 February 2020, 2020
Editor: International Legal Informatics Symposium

From Witch's Shot to Music Making Bones -- Resources for Medical Laymen to Technical Language and Vice Versa

Autores: Seiffe, Laura; Marten, Oliver; Mikhailov, Michael; Schmeier, Sven; Möller, Sebastian; Roller, Roland
Publicado en: Edición 1, 2020
Editor: European Language Resources Association

Information Extraction Models for German Clinical Text

Autores: Roland Roller, Laura Seiffe, Ammer Ayach, Sebastian Moller, Oliver Marten, Michael Mikhailov, Christoph Alt, Danilo Schmidt, Fabian Halleck, Marcel Naik, Wiebke Duettmann, Klemens Budde
Publicado en: 2020 IEEE International Conference on Healthcare Informatics (ICHI), 2020, Página(s) 1-2, ISBN 978-1-7281-5382-7
Editor: IEEE
DOI: 10.1109/ichi48887.2020.9374385

A Data-Driven Approach for Analyzing Healthcare Services Extracted from Clinical Records

Autores: Dimitrios Vogiatzis; Ernestina Menasalvas Ruiz; Mariano Provencio; Maria-Esther Vidal; Maria Torrente; Alejandro Rodríguez González; George Paliouras; Manuel Scurti
Publicado en: CBMS, Edición 4, 2020, ISSN 2372-9198
Editor: IEEE
DOI: 10.5281/zenodo.3862243

Prediction of Five-Year Breast Cancer Recurrence in Women Treated with Neoadjuvant Chemotherapy

Autores: Rabinovici-Cohen S., Fernandez X., Grandal Rejo B., Hexter E., Hijano Cubelos O., Pajula J., Polonen H., Reyal F., Rosen-Zvi M.
Publicado en: 2021
Editor: AMIA Annual Symposium

Big Data im Gesundheitswesen – Regulierung und Herausforderungen in acht europäischen Ländern (Big Data in healthcare – regulation and challenges in eight European countries)

Autores: Rik Wehrens, Johanna Kostenzer
Publicado en: ÖGPH-Newsletter Juni 2019, 2019, Página(s) 2-3, ISSN 2309-2246
Editor: ÖGPH, Österreichische Gesellschaft für Public Health (Austrian Association of Public Health)

Self-contained Information Retention Format (SIRF)

Autores: Simona Rabinovici-Cohen, Philip Viana, Sam Fineberg
Publicado en: 2019, Página(s) 1-37
Editor: ISO

Supervised Analysis for Phenotype Identification: The Case of Heart Failure Ejection Fraction Class

Autores: Cristina Lopez, Jose Luis Holgado, Raquel Cortes, Inma Sauri, Antonio Fernandez, Jose Miguel Calderon, Julio Nuñez, Josep Redon
Publicado en: Bioengineering, Edición 8/6, 2021, Página(s) 85, ISSN 2306-5354
Editor: Bioengineering
DOI: 10.3390/bioengineering8060085

Data Science in Healthcare: Benefits, Challenges and Opportunities

Autores: Ziawasch Abedjan, Nozha Boujemaa, Stuart Campbell, Patricia Casla, Supriyo Chatterjea, Sergio Consoli, Cristobal Costa-Soria, Paul Czech, Marija Despenic, Chiara Garattini, Dirk Hamelinck, Adrienne Heinrich, Wessel Kraaij, Jacek Kustra, Aizea Lojo, Marga Martin Sanchez, Miguel A. Mayer, Matteo Melideo, Ernestina Menasalvas, Frank Moller Aarestrup, Elvira Narro Artigot, Milan Petković, Diego Refor
Publicado en: Data Science for Healthcare - Methodologies and Applications, 2019, Página(s) 3-38, ISBN 978-3-030-05248-5
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-05249-2_1

Deep Metric Learning for Sequential Data Using Approximate Information

Autores: Stefan Thaler, Vlado Menkovski, Milan Petkovic
Publicado en: Machine Learning and Data Mining in Pattern Recognition - 14th International Conference, MLDM 2018, New York, NY, USA, July 15-19, 2018, Proceedings, Part I, Edición 10934, 2018, Página(s) 269-282, ISBN 978-3-319-96135-4
Editor: Springer International Publishing
DOI: 10.1007/978-3-319-96136-1_22

External Validation of a “Black-Box” Clinical Predictive Model in Nephrology: Can Interpretability Methods Help Illuminate Performance Differences?

Autores: Harry F. da Cruz, Boris Pfahringer, Frederic Schneider, Alexander Meyer, Matthieu-P. Schapranow
Publicado en: Artificial Intelligence in Medicine - 17th Conference on Artificial Intelligence in Medicine, AIME 2019, Poznan, Poland, June 26–29, 2019, Proceedings, Edición 11526, 2019, Página(s) 191-201, ISBN 978-3-030-21641-2
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-21642-9_25

Multimodal Prediction of Breast Cancer Relapse Prior to Neoadjuvant Chemotherapy Treatment

Autores: Simona Rabinovici-Cohen, Ami Abutbul, Xosé M. Fernández, Oliver Hijano Cubelos, Shaked Perek, Tal Tlusty
Publicado en: Predictive Intelligence in Medicine - Third International Workshop, PRIME 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 8, 2020, Proceedings, Edición 12329, 2020, Página(s) 188-199, ISBN 978-3-030-59353-7
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-59354-4_18

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