An Integrated Platform for Developing Brain Cancer Diagnostic Techniques

Deliverables

Job descriptions and adverts for all Fellows
Kick-off meeting
Report on secondments

Report on secondments listed in Table 1.2c six-monthly

List of complementary local training events

List of complementary local training events six-monthly

Report on network training events

Report on network training events listed in Table 1.2b six-monthly

Public engagement report

Public engagement report for every six month

Project website

Dissemination report

Dissemination report for public

Publications

Extensive patient-to-patient single nucleus transcriptome heterogeneity in pheochromocytomas and paragangliomas

Author(s): Peter Brazda Cristian Ruiz-Moreno, Wout L. Megchelenbrink, Henri J. L. M. Timmers and Hendrik G. Stunnenberg
Published in: Extensive patient-to-patient single nucleus transcriptome heterogeneity in pheochromocytomas and paragangliomas, 2022, ISSN 2234-943X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fonc.2022.965168

Diffuse large B-cell lymphoma: Time to focus on circulating blood nucleic acids?

Author(s): Giulia Regazzo, Francesco Marchesi, Manuela Spagnuolo, Ana Belén Díaz Méndez, Serena Masi, Andrea Mengarelli, Maria Giulia Rizzo
Published in: Blood Reviews, 2020, Page(s) 100776, ISSN 0268-960X
Publisher: Churchill Livingstone
DOI: 10.1016/j.blre.2020.100776

Detection of a Double-Stranded MGMT Gene Using Electrochemically Reduced Graphene Oxide (ErGO) Electrodes Decorated with AuNPs and Peptide Nucleic Acids (PNA)

Author(s): Safarzadeh, M Pan, G
Published in: Biosensors, Issue 12(2), 2022, Page(s) 98, ISSN 2079-6374
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/bios12020098

Large-Scale Analysis Reveals Gene Signature for Survival Prediction in Primary Glioblastoma

Author(s): Birbal Prasad, Yongji Tian, Xinzhong Li
Published in: Molecular Neurobiology, Issue 57/12, 2020, Page(s) 5235-5246, ISSN 0893-7648
Publisher: Humana Press, Inc.
DOI: 10.1007/s12035-020-02088-w

Recent Advances in Antifouling Materials for Surface Plasmon Resonance Biosensing in Clinical Diagnostics and Food Safety

Author(s): D' Agata, Roberta; Bellassai, Noemi; Jungbluth, Vanessa Wilma; Spoto, Giuseppe
Published in: Recent Advances in Antifouling Materials for Surface Plasmon Resonance Biosensing in Clinical Diagnostics and Food Safety, Issue 1, 2021, ISSN 2073-4360
Publisher: MDPI Polymers
DOI: 10.3390/polym13121929

Label-free immunodetection of α-synuclein by using a microfluidics coplanar electrolyte-gated organic field-effect transistor.

Author(s): Simona Ricci; Stefano Casalini; Stefano Casalini; Vitaliy Parkula; Meenu Selvaraj; Gulseren Deniz Saygin; Pierpaolo Greco; Fabio Biscarini; Fabio Biscarini; Marta Mas-Torrent
Published in: Label-free immunodetection of α-synuclein by using a microfluidics coplanar electrolyte-gated organic field-effect transistor, Issue 3, 2020, ISSN 0956-5663
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.bios.2020.112433

Fused inverse-normal method for integrated differential expression analysis of RNA-seq data

Author(s): Prasad, Birbal; Li, Xinzhong
Published in: Fused inverse-normal method for integrated differential expression analysis of RNA-seq data, Issue 2, 2022, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-022-04859-9

Time to focus on circulating nucleic acids for diagnosis and monitoring of gliomas: a systematic review of their role as biomarkers

Author(s): Ana Belén Díaz Méndez, Elisa Tremante, Giulia Regazzo, Sebastian Brandner, Maria Giulia Rizzo
Published in: Neuropathology and Applied Neurobiology, 2021, ISSN 0305-1846
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nan.12691

Ultrasensitive Immunoprofiling of Plasma Extracellular Vesicles Identifies Syndecan-1 as a Potential Tool for Minimally Invasive Diagnosis of Glioma

Author(s): Vineesh Indira Chandran, Charlotte Welinder, Ann-Sofie Månsson, Svenja Offer, Eva Freyhult, Maria Pernemalm, Sigrid M. Lund, Shona Pedersen, Janne Lehtiö, Gyorgy Marko-Varga, Maria C. Johansson, Elisabet Englund, Pia C. Sundgren, Mattias Belting
Published in: Clinical Cancer Research, 2019, ISSN 1078-0432
Publisher: American Association for Cancer Research
DOI: 10.1158/1078-0432.ccr-18-2946

Surface Plasmon Resonance for Biomarker Detection: Advances in Non-invasive Cancer Diagnosis

Author(s): Noemi Bellassai, Roberta D'Agata, Vanessa Jungbluth, Giuseppe Spoto
Published in: Frontiers in Chemistry, Issue 7, 2019, ISSN 2296-2646
Publisher: Frontiers in Chemistry
DOI: 10.3389/fchem.2019.00570

Urinary expression of let-7c cluster as non-invasive tool to assess the risk of disease progression in patients with high grade non-muscle invasive bladder Cancer: a pilot study

Author(s): Manuela Spagnuolo, Manuela Costantini, Mariaconsiglia Ferriero, Marco Varmi, Isabella Sperduti, Giulia Regazzo, Lucia Cicchillitti, Ana Belén Díaz Méndez, Giovanni Cigliana, Vincenzo Pompeo, Andrea Russo, Valentina Laquintana, Riccardo Mastroianni, Giulia Piaggio, Umberto Anceschi, Aldo Brassetti, Alfredo Bove, Gabriele Tuderti, Rocco Simone Flammia, Michele Gallucci, Giuseppe Simone, Maria Giu
Published in: Journal of Experimental & Clinical Cancer Research, Issue 39/1, 2020, ISSN 1756-9966
Publisher: BioMed Central/Springer Nature
DOI: 10.1186/s13046-020-01550-w

FO-SPR biosensor calibrated with recombinant extracellular vesicles enables specific and sensitive detection directly in complex matrices

Author(s): Yildizhan, Y., vajrala, V.S., Edward Geeurickx, E., Declerck, C., Duskunovic, N., De Sutter, D., Noppen, S., Delport, F., Schols, D., Swinnen, J.V., Eyckerman, S., Hendrix, A., Lammertyn, J., Spasic, D.
Published in: Journal of Extracellular Vesicles, 2021, ISSN 2001-3078
Publisher: Wiley
DOI: 10.1002/jev2.12059

A Label-Free DNA-Immunosensor Based on Aminated rGO Electrode for the Quantification of DNA Methylation

Author(s): Mina Safarzadeh; Ahmed Suhail; Jagriti Sethi; Anas A. Sattar; David Jenkins; Genhua Pan
Published in: Nanomaterials, Issue 11(4), 2021, Page(s) 985, ISSN 2079-4991
Publisher: MDPI
DOI: 10.3390/nano11040985

Trained innate immunity, long-lasting epigenetic modulation, and skewed myelopoiesis by heme

Author(s): Elisa Jentho, Cristian Ruiz-Moreno, Boris Novakovic, Ioannis Kourtzelis, Wout. L. Megchelenbrink, Rui Martins, Triantafyllos Chavakis, Miguel P. Soares, Lydia Kalafati, Joel Guerra, Franziska Roestel, Peter Bohm, Maren Godmann, Tatyana Grinenko, Anne Eugster, Martina Beretta, Leo A. B. Joosten , Mihai G. Netea, Michael Bauer, Hendrik G. Stunnenberg Sebastian.Weis@med.uni-jena.de, and Sebastian Wei
Published in: Trained innate immunity, long-lasting epigenetic modulation, and skewed myelopoiesis by heme, 2021, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2102698118

Integrated Multi-omics Analysis Using Variational Autoencoders: Application to Pan-cancer Classification

Author(s): Xiaoyu Zhang, Jingqing Zhang, Kai Sun, Xian Yang, Chengliang Dai, Yike Guo
Published in: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2019, Page(s) 765-769, ISBN 978-1-7281-1867-3
Publisher: IEEE
DOI: 10.1109/bibm47256.2019.8983228

EXTRACELLULAR VESICLE DETECTION DIRECTLY IN COMPLEX MATRICES USING FO-SPR SENSOR

Author(s): Yildizhan, Y., vajrala, V.S., Declerck, C., Geeurickx, E., Noppen, S., Schols, D., Swinnen, J.V., Eyckerman, S., Hendrix, A., Lammertyn, J., Spasic, D.
Published in: 2020
Publisher: MicroTAS

Additional file 1 of Urinary expression of let-7c cluster as non-invasive tool to assess the risk of disease progression in patients with high grade non-muscle invasive bladder Cancer: a pilot study

Author(s): Spagnuolo, Manuela; Costantini, Manuela; Mariaconsiglia Ferriero; Varmi, Marco; Sperduti, Isabella; Regazzo, Giulia; Cicchillitti, Lucia; Méndez, Ana Belén Díaz; Cigliana, Giovanni; Pompeo, Vincenzo; Russo, Andrea; Laquintana, Valentina; Mastroianni, Riccardo; Piaggio, Giulia; Anceschi, Umberto; Brassetti, Aldo; Bove, Alfredo; Tuderti, Gabriele; Flammia, Rocco Simone; Gallucci, Michele; Simone,
Published in: Issue 1, 2020
Publisher: BMC Part of Springer Nature
DOI: 10.6084/m9.figshare.12150969.v1

Additional file 2 of Urinary expression of let-7c cluster as non-invasive tool to assess the risk of disease progression in patients with high grade non-muscle invasive bladder Cancer: a pilot study

Author(s): Spagnuolo, Manuela; Costantini, Manuela; Mariaconsiglia Ferriero; Varmi, Marco; Sperduti, Isabella; Regazzo, Giulia; Cicchillitti, Lucia; Méndez, Ana Belén Díaz; Cigliana, Giovanni; Pompeo, Vincenzo; Russo, Andrea; Laquintana, Valentina; Mastroianni, Riccardo; Piaggio, Giulia; Anceschi, Umberto; Brassetti, Aldo; Bove, Alfredo; Tuderti, Gabriele; Flammia, Rocco Simone; Gallucci, Michele; Simone,
Published in: Issue 1, 2020
Publisher: BMC part of Springer Nature
DOI: 10.6084/m9.figshare.12150975

Deliverables

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