QUANTUM SORTER

Deliverables

Interdisciplinary Training Webinar (release 7)

Interdisciplinary Training Webinars. Total effort 6 PM. Content and speakers will be decided by the Coordinator together the PMB. Webinars taking place during the International Conferences will feature one of the keynote speakers.

Project website and logo (release 2)

Project website and logo after the initial release and the validation release website content will be regularly updated as part of T62

Interdisciplinary Training Webinar (release 2)

Interdisciplinary Training Webinars Total effort 6 PM Content and speakers will be decided by the Coordinator together the PMB Webinars taking place during the International Conferences will feature one of the keynote speakers

Interdisciplinary Training Webinar (release 3)

Interdisciplinary Training Webinars Total effort 6 PM Content and speakers will be decided by the Coordinator together the PMB Webinars taking place during the International Conferences will feature one of the keynote speakers

Interdisciplinary Training Webinar (release 6)

Interdisciplinary Training Webinars. Total effort 6 PM. Content and speakers will be decided by the Coordinator together the PMB. Webinars taking place during the International Conferences will feature one of the keynote speakers.

Interdisciplinary Training Webinar (release 1)

Interdisciplinary Training Webinars Total effort 6 PM Content and speakers will be decided by the Coordinator together the PMB Webinars taking place during the International Conferences will feature one of the keynote speakers

Project Video (release 2)

Update of the project video for the project

Printed materials (release 2)

Update of the printed material for the project (flyer, brochures, etc.)

Printed materials (release 1)

Production of the print material for the project Flyer conference brochures etc

Interdisciplinary Training Webinar (release 8)

Interdisciplinary Training Webinars Total effort 6 PM Content and speakers will be decided by the Coordinator together the PMB Webinars taking place during the International Conferences will feature one of the keynote speakers

Printed materials (release 3)

Update of the printed material for the project Flyers brochures etc

Interdisciplinary Training Webinar (release 5)

Interdisciplinary Training Webinars. Total effort 6 PM. Content and speakers will be decided by the Coordinator together the PMB. Webinars taking place during the International Conferences will feature one of the keynote speakers.

Project website and logo (release 1)

Project website and logo after the initial release and the validation release website content will be regularly updated as part of T62

Project video (release 1)

Promotional video for the project

Interdisciplinary Training Webinar (release 9)

Interdisciplinary Training Webinars Total effort 6 PM Content and speakers will be decided by the Coordinator together the PMB Webinars taking place during the International Conferences will feature one of the keynote speakers

Interdisciplinary Training Webinar (release 4)

Interdisciplinary Training Webinars. Total effort 6 PM. Content and speakers will be decided by the Coordinator together the PMB. Webinars taking place during the International Conferences will feature one of the keynote speakers.

International Conference Proceedings (release 1)

International Conference Proceedings they will be released online in electronic version

Manuscript for paper or report on theory advances/test on diagonalisation of operator through coordinate transformation (release 2)

Manuscript for paper or report on theory advances/test on diagonalisation of operator through coordinate transformation : 2 releases: one for early idea and suggestions (M12), to be implemented in T3.3, T3.4; the other for final simulation and test results (M24).

Manuscript for paper on lowest-dose wave recognition of proteins

Manuscript for paper on lowestdose wave recognition of proteins M42 Manuscript Public Experimental example on recognition of protein using different orientation or protein of different kinds

Dissemination and Public Engagement Plan including graphic design guidelines (release 1)

Plan for the dissemination and public engagement including graphic design guidelines

International Conference Proceedings (release 2)

International Conference Proceedings: they will be released online in electronic version.

Dissemination and Public Engagement Report

Report on the results of the dissemination and public engagement efforts

Manuscript for paper on implementation of new phase elements in TEM

Manuscript for paper on implementation of new phase elements in TEM: performance test with possible limits and merits with respect to hologram approach

Open data management plan

Decision on the kind of open access route for publications and about which data should be made available Data Repository is discussed

Report about working holographic sorter configuration

Report about testing holographic OAM sorter configuration

Short report on characterisation of fabricated e.-m. sorter (release 2)

Short report on characterisation of fabricated e.-m. sorter: it will be reported the progress in the fabrication of the first (M12) and second (M19) element

Report or Manuscript for paper on first test of plasmonic OAM spectrum
Report on magnetic circular dichroism measurement
Project Handbook

D11 Project Handbook includes procedures for general management reporting monitoring methodology

Short report on new hologram on protein-specific sorter

Short report on new hologram on protein-specific sorter: electrodes of magnets distribution minimising elements along the electron beam path.

Dissemination and Public Engagement Plan including graphic design guidelines (release 3)

Update of the plan for dissemination and public engagement.

Manuscript for paper or report on theory advances/test on diagonalisation of operator through coordinate transformation (release 1)

Manuscript for paper or report on theory advancestest on diagonalisation of operator through coordinate transformation 2 releases one for early idea and suggestions M12 to be implemented in T33 T34 the other for final simulation and test results M24

Manuscript for paper on imaging with SPP

Manuscript for paper on imaging with SPP ( spiral phase plates)

Open data management update 1

Update on the possible data repository management and open access publication

Report on integration of cryo-blades and cryo-imaging into the Titan-Holo microscope at FZJ (release 1)

Report on integration of cryoblades and cryoimaging into the TitanHolo microscope at FZJ We will report on the technical difficulties in the integration process M11 and the use of the full operating system to produce standard cryoimaging of proteins

Report on integration of cryo-blades and cryo-imaging into the Titan-Holo microscope at FZJ (release 2)

Report on integration of cryo-blades and cryo-imaging into the Titan-Holo microscope at FZJ. We will report on the technical difficulties in the integration process (M11) and the use of the full operating system to produce standard cryo-imaging of proteins

Manuscript for paper on the solution of one instance of the protein orientation problem

Manuscript for paper on the solution of one instance of the protein orientation problem Methods and limitation will be explored

Dissemination and Public Engagement Plan including graphic design guidelines (release 2)

Update of the plan for the dissemination and public engagement

International Conference Proceedings (release 3)

International Conference Proceedings they will be released online in electronic version

Open data management update 2

Final update on the possible data repository management and open access publication

Manuscript for paper on OAM Sorter characterisation of plasmons

Manuscript for paper on OAM Sorter characterisation of plasmons At least for one of the selected plasmonic structures gold particle or fullerene

Manuscript for paper on magnetic circular dichroism measurement

Manuscript for paper on magnetic circular dichroism measurement At the best of results of tasks 42 and 44

Publications

Alignment of electron optical beam shaping elements using a convolutional neural network

Author(s): E. Rotunno, A.H. Tavabi, P. Rosi, S. Frabboni, P. Tiemeijer, R.E. Dunin-Borkowski, V. Grillo
Published in: Ultramicroscopy, Issue 228, 2021, Page(s) 113338, ISSN 0304-3991
Publisher: Elsevier BV
DOI: 10.1016/j.ultramic.2021.113338

Dynamical diffraction effects in STEM orbital angular momentum resolved electron energy-loss magnetic chiral dichroism

Author(s): Matteo Zanfrognini, Enzo Rotunno, Jan Rusz, Rafal E. Dunin Borkowski, Ebrahim Karimi, Stefano Frabboni, Vincenzo Grillo
Published in: Physical Review B, Issue 102/18, 2020, ISSN 2469-9950
Publisher: American Physical Society
DOI: 10.1103/physrevb.102.184420

Ultrafast generation and control of an electron vortex beam via chiral plasmonic near fields

Author(s): G. M. Vanacore, G. Berruto, I. Madan, E. Pomarico, P. Biagioni, R. J. Lamb, D. McGrouther, O. Reinhardt, I. Kaminer, B. Barwick, H. Larocque, V. Grillo, E. Karimi, F. J. García de Abajo, F. Carbone
Published in: Nature Materials, Issue 18/6, 2019, Page(s) 573-579, ISSN 1476-1122
Publisher: Nature Publishing Group
DOI: 10.1038/s41563-019-0336-1

Single-particle cryo-EM: alternative schemes to improve dose efficiency

Author(s): Yue Zhang, Peng-Han Lu, Enzo Rotunno, Filippo Troiani, J. Paul van Schayck, Amir H. Tavabi, Rafal E. Dunin-Borkowski, Vincenzo Grillo, Peter J. Peters, Raimond B. G. Ravelli
Published in: Journal of Synchrotron Radiation, Issue 28/5, 2021, Page(s) 1343-1356, ISSN 1600-5775
Publisher: Internation Union of Crystallography
DOI: 10.1107/s1600577521007931

Experimental realization of a π /2 vortex mode converter for electrons using a spherical aberration corrector

Author(s): T. Schachinger, P. Hartel, P.-H. Lu, S. Löffler, M. Obermair, M. Dries, D. Gerthsen, R.E. Dunin-Borkowski, P. Schattschneider
Published in: Ultramicroscopy, Issue 229, 2021, Page(s) 113340, ISSN 0304-3991
Publisher: Elsevier BV
DOI: 10.1016/j.ultramic.2021.113340

Experimental demonstration of an electrostatic orbital angular momentum sorter for electrons

Author(s): Tavabi, Amir; Rosi, Paolo; Pozzi, Giulio; Roncaglia, Alberto; Frabboni, Stefano; Rotunno, Enzo; Lu, Peng-Han; Nijiland, Robert; Tiemeijer, Peter; Karimi, Ebrahim; Dunin-Borkowski, Rafal; Grillo, Vincenzo
Published in: Physical Review Letters, Issue 126, 2021, Page(s) 094802, ISSN 0031-9007
Publisher: American Physical Society
DOI: 10.1103/physrevlett.126.094802

Focused ion beam fabrication of Janus bimetallic cylinders acting as drift tube Zernike phase plates for electron microscopy

Author(s): Paolo Rosi, Gian Carlo Gazzadi, Stefano Frabboni, Vincenzo Grillo, Amir H. Tavabi, Rafal E. Dunin-Borkowski, Giulio Pozzi
Published in: Journal of Applied Physics, Issue 130/2, 2021, Page(s) 024507, ISSN 0021-8979
Publisher: American Institute of Physics
DOI: 10.1063/5.0050055

Fabrication of low aspect ratio three-element Boersch phase shifters for voltage-controlled three electron beam interference

Author(s): Pooja Thakkar, Vitaliy A. Guzenko, Peng-Han Lu, Rafal E. Dunin-Borkowski, Jan Pieter Abrahams, Soichiro Tsujino
Published in: Journal of Applied Physics, Issue 128/13, 2020, Page(s) 134502, ISSN 0021-8979
Publisher: American Institute of Physics
DOI: 10.1063/5.0020383

Visualization of unstained DNA nanostructures with advanced in-focus phase contrast TEM techniques

Author(s): Yoones Kabiri, Raimond B. G. Ravelli, Tibor Lehnert, Haoyuan Qi, Allard J. Katan, Natascha Roest, Ute Kaiser, Cees Dekker, Peter J. Peters, Henny Zandbergen
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-43687-5

Structural Analysis of the Partially Disordered Protein EspK from Mycobacterium Tuberculosis

Author(s): Abril Gijsbers, Nuria Sánchez-Puig, Ye Gao, Peter J. Peters, Raimond B. G. Ravelli, Dritan Siliqi
Published in: Crystals, Issue 11/1, 2021, Page(s) 18, ISSN 2073-4352
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cryst11010018

Arbitrary Conformal Transformations of Wave Functions

Author(s): G. Ruffato, E. Rotunno, L.M.C. Giberti, V. Grillo
Published in: Physical Review Applied, Issue 15/5, 2021, ISSN 2331-7019
Publisher: American Physical Society
DOI: 10.1103/physrevapplied.15.054028

Mycobacterium tuberculosis ferritin: a suitable workhorse protein for cryo-EM development

Author(s): Abril Gijsbers, Yue Zhang, Ye Gao, Peter J. Peters, Raimond B. G. Ravelli
Published in: Acta Crystallographica Section D Structural Biology, Issue 77/8, 2021, Page(s) 1077-1083, ISSN 2059-7983
Publisher: International Union of Crystallography
DOI: 10.1107/s2059798321007233

Structured Quantum Projectiles

Author(s): Hugo Larocque, Robert Fickler, Eliahu Cohen, Vincenzo Grillo, Rafal E. Dunin-Borkowski, Gerd Leuchs, Ebrahim Karimi
Published in: Physical Review A, Issue 99, 2018, Page(s) 023628, ISSN 2469-9926
Publisher: American Physical Society
DOI: 10.5281/zenodo.1478722

‘Twisted’ electrons

Author(s): Hugo Larocque, Ido Kaminer, Vincenzo Grillo, Gerd Leuchs, Miles J. Padgett, Robert W. Boyd, Mordechai Segev, Ebrahim Karimi
Published in: Contemporary Physics, Issue 59/2, 2018, Page(s) 126-144, ISSN 0010-7514
Publisher: Taylor & Francis
DOI: 10.1080/00107514.2017.1418046

Electron beam shaping: how to control the e-beam propagation along atomic columns

Author(s): E. Rotunno, A. Tavabi, E. Yucelen, S. Frabboni, R E. Dunin Borkowski, E. Karimi, B. J. McMorran, V Grillo
Published in: Physical Review Applied, Issue 11, 2018, Page(s) 044072, ISSN 2331-7043
Publisher: American Physical Society
DOI: 10.5281/zenodo.1478769

Generation of electron vortices using non-exact electric fields

Author(s): Amir H. Tavabi, Hugo Larocque, Peng-Han Lu, Martial Duchamp, Vincenzo Grillo, Ebrahim Karimi, Rafal E. Dunin-Borkowski, Giulio Pozzi
Published in: Physical Review Research, Issue 2, 2020, ISSN 2475-9953
Publisher: American Physical Scoiety
DOI: 10.5281/zenodo.1478755

Design of electrostatic phase elements for sorting the orbital angular momentum of electrons

Author(s): Giulio Pozzi, Vincenzo Grillo, Peng-Han Lu, Amir H. Tavabi, Ebrahim Karimi, Rafal E. Dunin-Borkowski
Published in: Ultramicroscopy, Issue 208, 2020, Page(s) 112861, ISSN 0304-3991
Publisher: Elsevier BV
DOI: 10.1016/j.ultramic.2019.112861

Full-field mode sorter using two optimized phase transformations for high-dimensional quantum cryptography

Author(s): Robert Fickler, Frédéric Bouchard, Enno Giese, Vincenzo Grillo, Gerd Leuchs, Ebrahim Karimi
Published in: Journal of Optics, Issue 22/2, 2020, Page(s) 024001, ISSN 2040-8978
Publisher: Institute of Physics Publishing
DOI: 10.1088/2040-8986/ab6303

Multi-twist polarization ribbon topologies in highly-confined optical fields

Author(s): Thomas Bauer, Peter Banzer, Frédéric Bouchard, Sergej Orlov, Lorenzo Marrucci, Enrico Santamato, Robert W Boyd, Ebrahim Karimi, Gerd Leuchs
Published in: New Journal of Physics, Issue 21/5, 2019, Page(s) 053020, ISSN 1367-2630
Publisher: Institute of Physics Publishing
DOI: 10.1088/1367-2630/ab171b

Mechanistic insight into the formation of colloidal WS 2 nanoflakes in hot alkylamine media

Author(s): Riccardo Scarfiello, Andrea Cesari, Davide Altamura, Sofia Masi, Concetta Nobile, Federica Balzano, Cinzia Giannini, Vincenzo Grillo, Amir H. Tavabi, Rafal E. Dunin-Borkowski, Gloria Uccello-Barretta, P. Davide Cozzoli, Aurora Rizzo
Published in: Nanoscale Advances, Issue 1/7, 2019, Page(s) 2772-2782, ISSN 2516-0230
Publisher: RSC
DOI: 10.1039/c9na00279k

In-plane Aligned Colloidal 2D WS2 Nanoflakes for Solution-Processable Thin Films with High Planar Conductivity

Author(s): Rosanna Mastria, Riccardo Scarfiello, Davide Altamura, Cinzia Giannini, Andrea Liscio, Alessandro Kovtun, Giuseppe Valerio Bianco, Giovanni Bruno, Vincenzo Grillo, Amir H. Tavabi, Rafal E. Dunin-Borkowski, Concetta Nobile, Adriano Cola, P. Davide Cozzoli, Salvatore Gambino, Aurora Rizzo
Published in: Scientific Reports, Issue 9/1, 2019, Page(s) 9002, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-45192-1

Single-pixel imaging using caustic patterns

Author(s): Ermes Toninelli, Daan Stellinga, Bereneice Sephton, Andrew Forbes, Miles J. Padgett
Published in: Scientific Reports, Issue 10/1, 2020, Page(s) 2281, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-59224-8

Insights into image contrast from dislocations in ADF-STEM

Author(s): E. Oveisi, M.C. Spadaro, E. Rotunno, V. Grillo, C. Hébert
Published in: Ultramicroscopy, Issue 200, 2019, Page(s) 139-148, ISSN 0304-3991
Publisher: Elsevier BV
DOI: 10.1016/j.ultramic.2019.02.004

Influence of 2 s Bloch wave state excitations on quantitative HAADF STEM imaging

Author(s): C. Wouters, T. Markurt, M. Albrecht, E. Rotunno, V. Grillo
Published in: Physical Review B, Issue 100/18, 2019, Page(s) 100404, ISSN 2469-9950
Publisher: APS
DOI: 10.1103/PhysRevB.100.184106

Adaptive Compressive Tomography with No a priori Information

Author(s): D. Ahn, Y. S. Teo, H. Jeong, F. Bouchard, F. Hufnagel, E. Karimi, D. Koutný, J. Řeháček, Z. Hradil, G. Leuchs, L. L. Sánchez-Soto
Published in: Physical Review Letters, Issue 122/10, 2019, Page(s) 100404, ISSN 0031-9007
Publisher: American Physical Society
DOI: 10.1103/PhysRevLett.122.100404

Compressed sensing of twisted photons

Author(s): Frédéric Bouchard, Dominik Koutný, Felix Hufnagel, Zdeněk Hradil, Jaroslav Řeháček, Yong-Siah Teo, Daekun Ahn, Hyunseok Jeong, Luis L. Sánchez-Soto, Gerd Leuchs, Ebrahim Karimi
Published in: Optics Express, Issue 27/13, 2019, Page(s) 17426, ISSN 1094-4087
Publisher: Optical Society of America
DOI: 10.1364/OE.27.017426

Orbital angular momentum resolved electron magnetic chiral dichroism

Author(s): Enzo Rotunno, Matteo Zanfrognini, Stefano Frabboni, Jan Rusz, Rafal E. Dunin Borkowski, Ebrahim Karimi, Vincenzo Grillo
Published in: Physical Review B, Issue 100/22, 2019, Page(s) 224409, ISSN 2469-9950
Publisher: APS
DOI: 10.1103/PhysRevB.100.224409

Multipole-phase division multiplexing

Author(s): Gianluca Ruffato, Vincenzo Grillo, Filippo Romanato
Published in: Optics Express, Issue 29/23, 2021, Page(s) 38095, ISSN 1094-4087
Publisher: Optical Society of America
DOI: 10.1364/oe.438898

Efficient molecule discrimination in electron microscopy through an optimized orbital angular momentum sorter

Author(s): F. Troiani, E. Rotunno, S. Frabboni, R. B. G. Ravelli, P. J. Peters, E. Karimi, and V. Grillo
Published in: Physical Review A, Issue 102, 2020, Page(s) 043510, ISSN 1050-2947
Publisher: American Physical Society
DOI: 10.1103/physreva.102.043510

SARS-CoV-2 productively infects human gut enterocytes

Author(s): Mart M. Lamers, Joep Beumer, Jelte van der Vaart, Kèvin Knoops, Jens Puschhof, Tim I. Breugem, Raimond B. G. Ravelli, J. Paul van Schayck, Anna Z. Mykytyn, Hans Q. Duimel, Elly van Donselaar, Samra Riesebosch, Helma J. H. Kuijpers, Debby Schipper, Willine J. van de Wetering, Miranda de Graaf, Marion Koopmans, Edwin Cuppen, Peter J. Peters, Bart L. Haagmans, Hans Clevers
Published in: Science, Issue 369/6499, 2020, Page(s) 50-54, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abc1669

Orbital angular momentum and energy loss characterization of plasmonic excitations in metallic nanostructures in TEM

Author(s): Zanfrognini, Matteo; Rotunno, Enzo; Frabboni, Stefano; Sit, Alicia; Karimi, Ebrahim; Hohenester, Ulrich; Grillo, Vincenzo
Published in: ACS photonics, Issue 58, 2019, Page(s) 620, ISSN 2330-4022
Publisher: American Chemical Society
DOI: 10.5281/zenodo.6386676

Towards Ptychography with Structured Illumination, and a Derivative-Based Reconstruction Algorithm

Author(s): W. Van den Broek, M. Schloz, T.C. Pekin, P.M. Pelz, P.-H. Lu, M. Kruth, V. Grillo, R.E. Dunin-Borkowski, R.J.D. Miller and C.T. Koch
Published in: Microscopy and Microanalysis, Issue 25, 2019, Page(s) 58
Publisher: Cambridge University Press

Intellectual Property Rights

A DEVICE FOR TRANSFORMING A CHARGED PARTICLE BEAM BETWEEN A VORTEX BEAM CONDITION AND A PLANE WAVE BEAM CONDITION

Application/Publication number: 20 700853
Date: 2020-01-10
Applicant(s): CONSIGLIO NAZIONALE DELLE RICERCHE

A DEVICE FOR TRANSFORMING A CHARGED PARTICLE BEAM BETWEEN A VORTEX BEAM CONDITION AND A PLANE WAVE BEAM CONDITION

Application/Publication number: 20 700853
Date: 2020-01-10
Applicant(s): FORSCHUNGSZENTRUM JULICH GMBH

DEVICE FOR MULTIPOLE PHASE DIVISION DEMULTIPLEXING/MULTIPLEXING AND SPATIAL DIVISION TELECOMMUNICATIONS SYSTEM THEREOF

Application/Publication number: 20 21057086
Date: 2021-08-03
Applicant(s): CONSIGLIO NAZIONALE DELLE RICERCHE

Deliverables

Publications

Intellectual Property Rights

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