Controlling mIcRobiomes CircuLations for bEtter food Systems

Project Information

CIRCLES

Grant agreement ID: 818290

DOI

10.3030/818290

Project closed

EC signature date 5 October 2018

Start date 1 November 2018

End date 31 October 2024

Funded under

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Total cost

€ 11 032 265,90

EU contribution

€ 9 999 964,88

Coordinated by

ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA
Italy

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (11)

"Report on microbiome dynamics and circulations across aquaculture actors ""farm-to-fork"""

The report will include data regarding identification and setup of lab-in-the-field sites (Task 5.1) and results of the longitudinal monitoring of microbiome dynamics and circulations across the Atlantic salmon and seabream aquaculture actors, from farm to fork (fish from egg to slaughter, feeds/supplements, processing and production system/environment, workers, food), as well as identification of correlations between food chain microbiomes and performance parameters (Task 5.2).

Report on microbiomes dynamics, circulations and association with performances across the poultry & swine food chains, observational phase

The report will include data regarding identification and setup of labinthefield sites and results of the longitudinal monitoring of microbiomes and covariates across poultry and swine food chains during the observational phase Tasks 41 42 and 45

Report on microbiomes dynamics, circulations and association with performances across plant food chains, observation phase

The report will include data regarding identification and setup of labinthefield sites and results of the longitudinal monitoring of microbiomes and covariates across plant food chains during the observation phase Tasks 32 and 33

Report on resistome dynamics and evolution across actors of CIRCLES food chains, poultry and swine, observation phase

The report will include data obtained from the resistome analysis on samples collected across all CIRCLES food chains poultry swine WP34 during the observational phases

Report on environmental metagenomes across CIRCLES food chains, aquaculture, observation phase

The report will include data obtained from the metagenome analysis on environmental samples collected across all CIRCLES food chains (aquaculture; WP5) during the observational phases.

Report on applications and effects of implemented microbiomes-tailored actions on sustainability, food safety, quality & quantity of aquaculture food chain

The report will include data regarding setup, test and validation of microbiomes-tailored circular actions, based on microbiome modulators, for aquaculture food chains using a fork-to-farm approach, benchmarking quality, productivity, safety, socio-economic and environmental sustainability impacts

Policy Brief

Policy recommendations for policy-makers.

Report on Final Event

The report will include a summary of the activities performed to organize and carry out the final event of the CIRCLES project.

Report on environmental metagenomes across CIRCLES food chains, plant, poultry and swine, observation phase

The report will include data obtained from the metagenome analysis on environmental samples collected across all CIRCLES food chains plant poultry swine WP34 during the observational phases

Report on resistome dynamics and evolution across actors of CIRCLES food chains, aquaculture, observation phase

The report will include data obtained from the resistome analysis on samples collected across all CIRCLES food chains (aquaculture; WP5) during the observational phases.

Report on City Tours

The report will include a summary of the activities of citizen engagement carried out as City Tour (Task 10.3)

Publications

Peer reviewed articles (25)

Influence of body lesion severity on oxidative status and gut microbiota of weaned pigs

Author(s): F. Correa, D. Luise, G. Palladino, D. Scicchitano, P. Brigidi, P.L. Martelli, G. Babbi, S. Turroni, G. Litta, M. Candela, S. Rampelli, P. Trevisi
Published in: animal, Issue 17, 2023, Page(s) 100818, ISSN 1751-7311
Publisher: Cambridge University Press
DOI: 10.1016/j.animal.2023.100818

Extraction method for the multiresidue analysis of legacy and emerging pollutants in marine mussels from the Adriatic Sea

Author(s): Nicolò Interino, Rossana Comito, Patrizia Simoni, Silvia Franzellitti, Giorgia Palladino, Simone Rampelli, Anastasiia Mosendz, Roberto Gotti, Aldo Roda, Marco Candela, Emanuele Porru, Jessica Fiori
Published in: Food Chemistry, Issue 425, 2024, Page(s) 136453, ISSN 0308-8146
Publisher: Elsevier BV
DOI: 10.1016/j.foodchem.2023.136453

Impact of Plastic Debris on the Gut Microbiota of Caretta caretta From Northwestern Adriatic Sea

Author(s): Elena Biagi; Elena Biagi; Margherita Musella; Margherita Musella; Giorgia Palladino; Giorgia Palladino; Valeria Angelini; Sauro Pari; Chiara Roncari; Chiara Roncari; Daniel Scicchitano; Daniel Scicchitano; Simone Rampelli; Silvia Franzellitti; Silvia Franzellitti; Marco Candela; Marco Candela
Published in: Frontiers in Marine Science, Issue 1, 2021, ISSN 2296-7745
Publisher: FRONTIERS MEDIA SA
DOI: 10.3389/fmars.2021.637030

G-Tric: generating three-way synthetic datasets with triclustering solutions.

Author(s): João Lobo; Rui Henriques; Sara C. Madeira
Published in: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-28 (2021), Issue 2, 2021, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-020-03925-4

Impact of Marine Aquaculture on the Microbiome Associated with Nearby Holobionts: The Case of Patella caerulea Living in Proximity of Sea Bream Aquaculture Cages

Author(s): Giorgia Palladino; Simone Rampelli; Daniel Scicchitano; Margherita Musella; Grazia Marina Quero; Fiorella Prada; Arianna Mancuso; Anne Mette Seyfarth; Silvia Turroni; Marco Candela; Elena Biagi
Published in: Microorganisms, 2021, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms9020455

Bottom-up perspective – The role of roots and rhizosphere in climate change adaptation and mitigation in agroecosystems

Author(s): T. S. George, D. Bulgarelli, A. Carminati, Y. Chen, D. Jones, Y. Kuzyakov, A. Schnepf, M. Wissuwa, T. Roose
Published in: Plant and Soil, Issue 500, 2024, Page(s) 297-323, ISSN 0032-079X
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11104-024-06626-6

Seasonal Changes in Microbial Communities Associated With the Jewel Anemone Corynactis viridis.

Author(s): Giorgia Palladino; Giorgia Palladino; Elena Biagi; Elena Biagi; Simone Rampelli; Margherita Musella; Margherita Musella; Federica D’Amico; Federica D’Amico; Silvia Turroni; Patrizia Brigidi; Gian Marco Luna; Marco Candela; Marco Candela
Published in: Frontiers in Marine Science, 2021, ISSN 2296-7745
Publisher: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.627585

Age and environment are the main drivers shaping the wild common sole (Solea solea) microbiota

Author(s): Marco Basili, Laura Sabatini, Giulio Pellini, Naomi Massaccesi, Elena Manini, Fortunata Donato, Giuseppe Scarcella, Gian Marco Luna, Grazia Marina Quero
Published in: BMC Ecology and Evolution, Issue 24, 2024, ISSN 2730-7182
Publisher: Springer Nature
DOI: 10.1186/s12862-024-02303-5

Host-Associated Bacterial Succession during the Early Embryonic Stages and First Feeding in Farmed Gilthead Sea Bream ( Sparus aurata ).

Author(s): Eleni Nikouli; Alexandra Meziti; Efthimia Antonopoulou; Eleni Mente; Konstantinos Ar. Kormas
Published in: Genes, Vol 10, Iss 7, p 483 (2019), Issue 2, 2019, ISSN 2073-4425
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes10070483

Signature of the anthropogenic impacts on the epipelagic microbiome of the North-Western Adriatic Sea (Mediterranean Sea)

Author(s): Giulia Trapella, Daniel Scicchitano, Lucia Foresto, Andrea Nicoló Dell’Acqua, Elena Radaelli, Silvia Turroni, Simone Rampelli, Cinzia Corinaldesi, Giorgia Palladino, Marco Candela
Published in: Frontiers in Marine Science, Issue 11, 2024, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2024.1340088

Genome-Annotated Bacterial Collection of the Barley Rhizosphere Microbiota

Author(s): Senga Robertson-Albertyn, James C. Abbott, Federico Concas, Lynn H. Brown, Jamie N. Orr, Timothy S. George, Davide Bulgarelli
Published in: Microbiology Resource Announcements, Issue 11, 2022, ISSN 2576-098X
Publisher: American Society for Microbiology
DOI: 10.1128/mra.01064-21

Timely Control of Gastrointestinal Eubiosis: A Strategic Pillar of Pig Health

Author(s): Paolo Trevisi, Diana Luise, Federico Correa and Paolo Bosi
Published in: Microorganisms, Issue 9(2):313, 2021, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms9020313

Seasonal dynamics of the microbiome-host response to pharmaceuticals and pesticides in Mytilus galloprovincialis farmed in the Northwestern Adriatic Sea

Author(s): Giorgia Palladino, Simone Rampelli, Daniel Scicchitano, Enrico Nanetti, Letizia Iuffrida, Rajapaksha Haddokara Gedara Rasika Wathsala, Nicolò Interino, Mauro Marini, Emanuele Porru, Silvia Turroni, Jessica Fiori, Silvia Franzellitti, Marco Candela
Published in: Science of The Total Environment, Issue 887, 2024, Page(s) 163948, ISSN 0048-9697
Publisher: Elsevier BV
DOI: 10.1016/j.scitotenv.2023.163948

Tissue-scale microbiota of the Mediterranean mussel (Mytilus galloprovincialis) and its relationship with the environment

Author(s): Margherita Musella, Rasika Wathsala, Teresa Tavella, Simone Rampelli, Monica Barone, Giorgia Palladino, Elena Biagi, Patrizia Brigidi, Silvia Turroni, Silvia Franzellitti, Marco Candela
Published in: Science of The Total Environment, Issue 717, 2020, Page(s) 137209, ISSN 0048-9697
Publisher: Elsevier BV
DOI: 10.1016/j.scitotenv.2020.137209

Nitrogen Fertilizers Shape the Composition and Predicted Functions of the Microbiota of Field-Grown Tomato Plants

Author(s): Federica Caradonia, Domenico Ronga, Marcello Catellani, Cleber Vinícius Giaretta Azevedo, Rodrigo Alegria Terrazas, Senga Robertson-Albertyn, Enrico Francia, Davide Bulgarelli
Published in: Phytobiomes Journal, Issue 3/4, 2019, Page(s) 315-325, ISSN 2471-2906
Publisher: APS Publications
DOI: 10.1094/pbiomes-06-19-0028-r

Composition and biodiversity of soil and root-associated microbiome in Vitis vinifera cultivar Lambrusco distinguish the microbial terroir of the Lambrusco DOC protected designation of origin area on a local scale

Author(s): Nanetti, Enrico;Palladino, Giorgia;Scicchitano, Daniel;Trapella, Giulia;Cinti, Nicolò;Fabbrini, Marco;Cozzi, Alice;Accetta, Giovanni;Tassini, Carlo;Iannaccone, Luigi;Candela, Marco;Rampelli, Simone
Published in: FRONTIERS IN MICROBIOLOGY, 2023, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2023.1108036

Metagenomic shifts in mucus, tissue and skeleton of the coral Balanophyllia europaea living along a natural CO2 gradient

Author(s): Palladino, Giorgia;Caroselli, Erik;Tavella, Teresa;D’Amico, Federica;Prada, Fiorella;Mancuso, Arianna;Franzellitti, Silvia;Rampelli, Simone;Candela, Marco;Goffredo, Stefano;Biagi, Elena
Published in: ISME Communications, 2022, ISSN 2730-6151
Publisher: Springer Nature Limited
DOI: 10.1038/s43705-022-00152-1

Microbiome Research: Open Communication Today, Microbiome Applications in the Future

Author(s): Bettina Schelkle Quentin Galand
Published in: Microorganisms, 2020, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms8121960

Pulp and paper mill sludges decrease soil erodibility

Author(s): Kimmo Rasa; Taina Pennanen; Krista Peltoniemi; Sannakajsa Velmala; Hannu Fritze; Janne Kaseva; Juuso Joona; Risto Uusitalo
Published in: Journal of Environmental Quality, Issue 2, 2021, Page(s) 172-184, ISSN 0047-2425
Publisher: American Society of Agronomy, Inc.
DOI: 10.1002/jeq2.20170

Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment

Author(s): Daniel Scicchitano, Daniela Leuzzi, Giulia Babbi, Giorgia Palladino, Silvia Turroni, Cédric Christian Laczny, Paul Wilmes, Federico Correa, Pimlapas Leekitcharoenphon, Castrense Savojardo, Diana Luise, Pierluigi Martelli, Paolo Trevisi, Frank Møller Aarestrup, Marco Candela, Simone Rampelli
Published in: Animal Microbiome, Issue 6, 2024, ISSN 2524-4671
Publisher: Springer Nature
DOI: 10.1186/s42523-024-00305-8

Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies

Author(s): Rodrigo Alegria Terrazas , Senga Robertson-Albertyn, Aileen Mary Corral, Carmen Escudero-Martinez , Rumana Kapadia, Katharin Balbirnie-Cumming, Jenny Morris, Pete E. Hedley, Matthieu Barret, Gloria Torres-Cortes, Eric Paterson, Elizabeth M. Baggs, James Abbott, Davide Bulgarelli
Published in: mSystems, 2022, ISSN 2379-5077
Publisher: American Society for Microbiology
DOI: 10.1128/msystems.00934-22

Plasticity of the Anemonia viridis microbiota in response to different levels of combined anthropogenic and environmental stresses

Author(s): Palladino, G;Rampelli, S;Galia-Camps, C;Scicchitano, D;Trapella, G;Nanetti, E;Angelini, V;Cleo, D;Turroni, S;Corinaldesi, C;Candela, M
Published in: Frontiers in Marine Science, 2022, ISSN 2296-7745
Publisher: FRONTIERS MEDIA SA
DOI: 10.3389/fmars.2022.956899

Exploring clade differentiation of the Faecalibacterium prausnitzii complex

Author(s): Fabbrini, Marco;Candela, Marco;Turroni, Silvia;Brigidi, Patrizia;Rampelli, Simone
Published in: iScience, 2022, ISSN 2589-0042
Publisher: CELL PRESS
DOI: 10.1016/j.isci.2022.105533

A footptrint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota

Author(s): Rodrigo Alegria Terrazas; Katharin Balbirnie-Cumming; Jenny Morris; Pete E. Hedley; Joanne Russell; Eric Paterson; Elizabeth M. Baggs; Eyal Fridman; Davide Bulgarelli
Published in: Scientific Reports, Vol 10, Iss 1, Pp 1-13 (2020), Issue 1, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-69672-x

Routes of dispersion of antibiotic resistance genes from the poultry farm system

Author(s): Daniel Scicchitano, Giulia Babbi, Giorgia Palladino, Silvia Turroni, Yitagele Terefe Mekonnen, Cédric Laczny, Paul Wilmes, Pimlapas Leekitcharoenphon, Andrea Castagnetti, Federica D'Amico, Patrizia Brigidi, Castrense Savojardo, Gerardo Manfreda, Pierluigi Martelli, Alessandra De Cesare, Frank Møller Aarestrup, Marco Candela, Simone Rampelli
Published in: Science of The Total Environment, Issue 912, 2024, Page(s) 169086, ISSN 0048-9697
Publisher: Elsevier BV
DOI: 10.1016/j.scitotenv.2023.169086

Intellectual Property Rights

Trademark (2)

smart microbiome food

Application/Publication number: EUIPO 018024277
Date: 2019-02-19
Applicant(s): ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA

smart microbiome food

Application/Publication number: EUIPO 018024277
Date: 2019-02-19
Applicant(s): ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA