Pandemic Preparedness and Response

Project Information

PANDEM-2

Grant agreement ID: 883285

DOI

10.3030/883285

Project closed

EC signature date 30 November 2020

Start date 1 February 2021

End date 31 July 2023

Funded under

• Secure societies - Protecting freedom and security of Europe and its citizens

Total cost

€ 9 746 061,62

EU contribution

€ 8 705 650,00

Coordinated by

UNIVERSITY OF GALWAY
Ireland

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (27)

Pandemic Modeling Tool (software and documentation)

Pandemic Modeling Tool software anddocumentation

Brand, Dissemination and Communications Strategy and Implementation Plan

Brand DisseminationandCommunications Strategy and Implementation Plan

Resource Planning System (software and documentation)

Resource Planning System software and documentation

Visual Analytics Component, API and developer documentation (version 2)

Visual Analytics Component API and developer documentation version 2

Report on social, ethical and legal issues in pandemic preparedness planning

Report on social ethical and legal issues in pandemic preparedness planning

Enhanced Influenzanet to include new events under surveillance and adapt to pandemic situations
Privacy, data protection, social and ethical impact assessment final report

Privacy data protection social and ethical impact assessment final report

Privacy, data protection, social and ethical impact assessment interim report

Privacy data protection social and ethical impact assessment interim report

Pandemic Communications Training syllabus and materials
Operational strategy for implementation of IT system
Social media mining component to support community surveillance
Training Resources & Repository on Simulation Exercise

Training Resources Repository onSimulation Exercise

Database schema and setup report
Three scenario scripts
Privacy, social & ethical issues preliminary guide

Privacysocialethicalissues preliminary guide

Report on demonstrations
Networking resources
KPIs and Evaluation Report
Pandemic Communications Toolkit
Toolkit with guidelines, protocols and resources on biosafety and biosecurity for first responders, clinical staff and laboratory personnel during cross-border responses

Toolkit with guidelines protocols andresources on biosafety and biosecurity for first responders clinical staff and laboratory personnel during crossborder responses

Visual Analytics Component, API and developer documentation (version 1)

Visual Analytics Component API and developer documentation version 1

API specification and documentation
Report on laboratory data sources including capture and integration of NGS data for pandemic management. Data sources specification document and database structure for WP3

Report on laboratory data sources including capture and integration of NGS data for pandemic management Data sources specification document and database structure for WP3

Dashboard advanced prototypes
Dashboard design
Scenarios analysis and pandemic communications requirements statement

Scenariosanalysis and pandemic communications requirements statement

List and description of selected data sources and analytical tools to monitor pandemics. FAIR-compliant metadata profiles. Data sources specification document and agreed database structure for WP3

List and description of selected data sources and analytical tools to monitor pandemics FAIRcompliant metadata profiles Data sources specification document and agreed database structure for WP3

Websites, patent fillings, videos etc. (1)

Project Website

Open Research Data Pilot (1)

Data management plan

Other (2)

Dashboard initial prototype
Software to extract pandemic indicators from selected data sources

Publications

Peer reviewed articles (7)

Anchoring the mean generation time in the SEIR to mitigate biases in ℜ0 estimates due to uncertainty in the distribution of the epidemiological delays

Author(s): Andrade Jair; Duggan Jim
Published in: R Soc Open Sci, Issue Volume 10(8); 2023 Aug, 2023, ISSN 2054-5703
Publisher: Natioal Library of Medicine
DOI: 10.1098/rsos.230515

Genomic Characterization of Multidrug-Resistant Extended Spectrum β-Lactamase-Producing Klebsiella pneumoniae from Clinical Samples of a Tertiary Hospital in South Kivu Province, Eastern Democratic Republic of Congo

Author(s): Leonid M. Irenge; Jérôme Ambroise; Bertrand Bearzatto; Jean-François Durant; Maxime Bonjean; Jean-Luc Gala
Published in: Microorganissms, Issue 7, 2023, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms11020525

Participatory Surveillance for COVID-19 Trend Detection in Brazil: Cross-sectional Study

Author(s): Wittwer Salome; Paolotti Daniela; Lichand Guilherme; Neto Onicio Leal
Published in: JMIR Public Health Surveillance, Issue Vol 9 2023, 2023, ISSN 2369-2960
Publisher: JMIR
DOI: 10.2196/44517

Inferring the effective reproductive number from deterministic and semi-deterministic compartmental models using incidence and mobility data

Author(s): Jair Andrade, Jim Duggan
Published in: PLOS Computational Biology, Issue 18 (6), 2022, Page(s) e1010206, ISSN 1553-7358
Publisher: PLOS
DOI: 10.1371/journal.pcbi.1010206

A Bayesian approach to calibrate system dynamics models using Hamiltonian Monte Carlo

Author(s): Jair Andrade, Jim Duggan
Published in: System Dynamics Review, Issue Volume37, Issue 4, 2021, Page(s) 283-309, ISSN 0883-7066
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/sdr.1693

Exploring the Effect of Misinformation on Infectious Disease Transmission

Author(s): Nabeela Mumtaz, Caroline Green, Jim Duggan
Published in: Systems, Issue 10, 2022, Page(s) 50, ISSN 2079-8954
Publisher: MDPI open access journals
DOI: 10.3390/systems10020050

Attitudes towards booster, testing and isolation, and their impact on COVID-19 response in winter 2022/2023 in France, Belgium, and Italy: a cross-sectional survey and modelling study

Author(s): Giulia de Meijere, Eugenio Valdano, Claudio Castellano, Marion Debin, Charly Kengne-Kuetche, Clément Turbelin, Harold Noël, Joshua S. Weitz, Daniela Paolotti, Lisa Hermans, Niel Hens, Vittoria Colizza
Published in: The Lancet Regional Health - Europe, 2023, ISSN 2666-7762
Publisher: Elsevier
DOI: 10.1016/j.lanepe.2023.100614

Other (1)

On the many advantages of using the VariantExperiment class to store, exchange and analyze SARS-CoV-2 genomic data and associated metadata

Author(s): Jérôme Ambroise, Laurent Gatto, Julie Hurel, Bertrand Bearzatto, Jean-Luc Gala
Published in: Biorxiv, 2021, Page(s) 1-7
Publisher: Cold Spring Harbour Laboratory
DOI: 10.1101/2021.04.05.438328

Non-peer reviewed articles (1)

Global misinformation spillovers in the online vaccination debate before and during COVID-19

Author(s): Jacopo Lenti, Kyriaki Kalimeri, André Panisson, Daniela Paolotti, Michele Tizzani, Yelena Mejova, Michele Starnin
Published in: arXiv, 2023, ISSN 2331-8422
Publisher: arXiv.org
DOI: 10.48550/arxiv.2211.11495

Conference proceedings (2)

Echoes through Time: Evolution of the Italian COVID-19 Vaccination Debate

Author(s): Giuseppe Crupi, Yelena Mejova, Michele Tizzani, Daniela Paolotti, Andre Panisson
Published in: Proceedings of the Sixteenth International AAAI Conference on Web and Social Media (ICWSM 2022), 2022, Page(s) 1-12
Publisher: Cornell University
DOI: 10.48550/arxiv.2204.12943

Identifying essential resources for pandemic response in healthcare and public health: an international Delphi study within the EU-PANDEM-2 project

Author(s): Berend Beishuizen, Mart Stein, Anne-Romy Peelen , Joeri Buis, Alma Tostmann, Caroline Green, James Duggan, Máire Connolly, Chantal Bleeker-Rovers,Aura Timen
Published in: 17th World Congress on Public Health, 2023
Publisher: Population Medicine
DOI: 10.18332/popmed/163743