Modern Approaches to the Monitoring of BiOdiversity

Project Information

MAMBO

Grant agreement ID: 101060639

DOI

10.3030/101060639

EC signature date 2 June 2022

Start date 1 September 2022

End date 31 August 2026

Funded under

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Total cost

€ 3 703 783,75

EU contribution

€ 3 703 783,00

Coordinated by

AARHUS UNIVERSITET
Denmark

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (9)

Project identity, promotional materials pack and website running

(Project identity, promotional materials pack and website running)

Review of habitat condition metrics used across the EU, suitable for RS

(Review of habitat condition metrics used across the EU, suitable for RS)

Guidelines for data standards and technical specifications of MAMBO tools

(Guidelines for data standards and technical specifications of MAMBO tools )

Risk Management Plan

(Risk Management Plan)

Report on stakeholder mapping and network analysis

(Report on stakeholder mapping and network analysis)

Report on optimal positioning and linkage of MAMBO tools to KCBD and RI landscape

(Report on optimal positioning and linkage of MAMBO tools to KCBD and RI landscape )

Report on stakeholder needs

(Report on stakeholder needs)

Assessment of interoperability and maturity for upscaling habitat condition metrics

(Assessment of interoperability and maturity for upscaling habitat condition metrics )

Project Management and Quality Assurance Plan (Updated each reporting period)

(Project Management and Quality Assurance Plan (Updated each reporting period))

Other (1)

Open-source deep learning framework for habitat extent mapping - version 1.0

(Open-source deep learning framework for habitat extent mapping - version 1.0)

Publications

Other (2)

The GeoLifeCLEF 2023 Dataset to evaluate plant species distribution models at high spatial resolution across Europe

Author(s): Christophe Botella, Benjamin Deneu, Diego Marcos, Maximilien Servajean, Joaquim Estopinan, et al..
Published in: ArXiv preprint - Populations and Evolution, 2023, ISSN 2331-8422
Publisher: ArXiv.org
DOI: 10.48550/arXiv.2308.05121

A General Method for Detection and Segmentation of Terrestrial Arthropods in Images

Author(s): Asger Svenning, Guillaume Mougeot, Jamie Alison, Daphne Chevalier, Nisa Luise Chavez Molina, Song-Quan Ong, Kim Bjerge, Juli Carrillo, Toke Thomas Hoeye, Quentin Geissmann
Published in: 2025
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.04.08.647223

Peer reviewed articles (12)

Modern Approaches to the Monitoring of Biоdiversity (MAMBO)

Author(s): Høye TT, August T, Balzan MV, Biesmeijer K, Bonnet P, Breeze TD, Dominik C, Gerard F, Joly A, Kalkman V, Kissling WD, Metodiev T, Moeslund J, Potts S, Roy DB, Schweiger O, Senapathi D, Settele J, Stoev P, Stowell D
Published in: Research Ideas and Outcomes, Issue 9, 2023, ISSN 2367-7163
Publisher: Pensoft Publishers
DOI: 10.3897/RIO.COLL.223

Towards edge processing of images from insect camera traps

Author(s): Kim Bjerge, Henrik Karstoft, Toke T. Høye
Published in: Remote Sensing in Ecology and Conservation, 2025, ISSN 2056-3485
Publisher: Wiley
DOI: 10.1002/RSE2.70007

Data from three camera trapping pilots in the Amsterdam Water Supply Dunes of the Netherlands

Author(s): Julian C. Evans, Rotem Zilber, W. Daniel Kissling
Published in: Data in Brief, Issue 54, 2025, ISSN 2352-3409
Publisher: Elsevier BV
DOI: 10.1016/J.DIB.2024.110544

Laserfarm – A high-throughput workflow for generating geospatial data products of ecosystem structure from airborne laser scanning point clouds

Author(s): Kissling, W.D.; Shi, Y.; Koma, Z.; Meijer, C.; Ku, O.; Nattino, F.; Seijmonsbergen, A.C.; Grootes, M.W.
Published in: Ecological Informatics, Issue v.72, 2022, ISSN 1574-9541
Publisher: Elsevier
DOI: 10.1016/J.ECOINF.2022.101836

Diversity and Distributions

Author(s): W. Daniel Kissling, Yifang Shi
Published in: Diversity and Distributions, Issue v. 29, 2023, ISSN 1366-9516
Publisher: Wiley
DOI: 10.1111/ddi.13760

Hierarchical classification of insects with multitask learning and anomaly detection

Author(s): Bjerge, Kim; Geissmann, Quentin; Alison, Jamie; Mann, Hjalte M.R.; Høye, Toke Thomas; Dyrmann, Mads; Karstoft, Henrik
Published in: Ecological Informatics, Issue v.77, 2023, ISSN 1574-9541
Publisher: Elsevier BV
DOI: 10.1016/J.ECOINF.2023.102278

Accurate detection and identification of insects from camera trap images with deep learning

Author(s): Kim Bjerge; Jamie Alison; Mads Dyrmann; Carsten Eie Frigaard; Hjalte M. R. Mann; Toke Thomas Høye
Published in: PLOS Sustainability and Transformation, 2023, ISSN 2767-3197
Publisher: Public Library of Science
DOI: 10.1101/2022.10.25.513484

A deep learning pipeline for time-lapse camera monitoring of insects and their floral environments

Author(s): Kim Bjerge, Henrik Karstoft, Hjalte M.R. Mann, Toke T. Høye
Published in: Ecological Informatics, Issue 84, 2024, ISSN 1574-9541
Publisher: Elsevier BV
DOI: 10.1016/J.ECOINF.2024.102861

Adapting a global plant identification model to detect invasive alien plant species in high-resolution road side images

Author(s): Vincent Espitalier, Jean-Christophe Lombardo, Hervé Goëau, Christophe Botella, Toke Thomas Høye, Mads Dyrmann, Pierre Bonnet, Alexis Joly
Published in: Ecological Informatics, Issue 89, 2025, ISSN 1574-9541
Publisher: Elsevier BV
DOI: 10.1016/J.ECOINF.2025.103129

AI Species Identification Using Image and Sound Recognition for Citizen Science, Collection Management and Biomonitoring: From Training Pipeline to Large-Scale Models

Author(s): Laurens Hogeweg, Ni Yan, Django Brunink, Khadija Ezzaki-Chokri, Wilfred Gerritsen, Rita Pucci, Burooj Ghani, Dan Stowell, Vincent Kalkman
Published in: Biodiversity Information Science and Standards, Issue 8, 2024, ISSN 2535-0897
Publisher: Pensoft Publishers
DOI: 10.3897/BISS.8.136839

A workflow for extracting ungulate trails in wetlands using 3D point clouds obtained from airborne laser scanning

Author(s): Jinhu Wang, Perry Cornelissen, W. Daniel Kissling
Published in: Frontiers in Remote Sensing, Issue 6, 2025, ISSN 2673-6187
Publisher: Frontiers Media SA
DOI: 10.3389/FRSEN.2025.1599128

Performance of Computer Vision Algorithms for Fine‐Grained Classification Using Crowdsourced Insect Images

Author(s): Rita Pucci, Vincent J. Kalkman, Dan Stowell
Published in: IET Computer Vision, Issue 19, 2025, ISSN 1751-9632
Publisher: Institution of Engineering and Technology (IET)
DOI: 10.1049/CVI2.70006

Conference proceedings (7)

Insect Identification in the Wild: The AMI Dataset

Author(s): Aditya Jain, Fagner Cunha, Michael James Bunsen, Juan Sebastián Cañas, Léonard Pasi, Nathan Pinoy, Flemming Helsing, JoAnne Russo, Marc Botham, Michael Sabourin, Jonathan Fréchette, Alexandre Anctil, Yacksecari Lopez, Eduardo Navarro, Filonila Perez Pimentel, Ana Cecilia Zamora, José Alejandro Ramirez Silva, Jonathan Gagnon, Tom August, Kim Bjerge, Alba Gomez Segura, Marc Bélisle, Yves Basset, Kent P. McFarland, David Roy, Toke Thomas Høye, Maxim Larrivée, David Rolnick
Published in: Lecture Notes in Computer Science, Computer Vision – ECCV 2024, 2024
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72913-3_4

Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service

Author(s): Pierre Bonnet , Antoine A.A. Affouard, Jean-Christophe J.-C. Lombardo , Mathias Chouet , Hugo Gresse , Vanessa Hequet , Remi Palard , Maxime Fromholtz , Vincent Espitalier , Hervé H.G. Goëau , Benjamin Deneu , Christophe Botella , Joaquim Estopinan , Césa
Published in: Biodiversity Information Science and Standards, 2023, ISSN 2535-0897
Publisher: Pensoft Publishers
DOI: 10.3897/BISS.7.112545

Lecture Notes in Computer Science

Author(s): Alexis Joly, Hervé Goëau, Stefan Kahl, Lukáš Picek, Christophe Botella, Diego Marcos, Milan Šulc, Marek Hrúz, Titouan Lorieul, Sara Si Moussi, Maximilien Servajean, Benjamin Kellenberger, Elijah Cole, Andrew Durso, Hervé Glotin, Robert Planqué, Willem-Pie
Published in: ECIR 2023 LNCS proceedings, 2023, ISSN 0302-9743
Publisher: Springer
DOI: 10.1007/978-3-031-28241-6_65

Overview of GeoLifeCLEF 2023: Species composition prediction with high spatial resolution at continental scale using remote sensing

Author(s): Christophe Botella, Benjamin Deneu, Diego Marcos, Maximilien Servajean, Théo Larcher, César Leblanc, Joaquim Estopinan, Pierre Bonnet, Alexis Joly
Published in: Working Notes of the Conference and Labs of the Evaluation Forum, 2023, ISSN 1613-0073
Publisher: CEUR-WS

Overview of PlantCLEF 2023: Image-based Plant Identification at Global Scale

Author(s): Hervé Goëau, Pierre Bonnet, Alexis Joly
Published in: Working Notes of the Conference and Labs of the Evaluation Forum, 2023, ISSN 1613-0073
Publisher: CEUR-WS

Lecture Notes in Computer Science

Author(s): Alexis Joly, Hervé Goëau, Stefan Kahl, Lukáš Picek, Christophe Botella, Diego Marcos, Milan Šulc, Marek Hrúz, Titouan Lorieul, Sara Si Moussi, Maximilien Servajean, Benjamin Kellenberger, Elijah Cole, Andrew Durso, Hervé Glotin, Robert Planqué, Willem-Pie
Published in: Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2023, ISSN 0302-9743
Publisher: Springer
DOI: 10.1007/978-3-031-42448-9_27

Comparison between transformers and convolutional models for fine-grained classification of insects

Author(s): Rita Pucci, Vincent J. Kalkman, Dan Stowell
Published in: Workshop Camera Traps, AI and Ecology, 2023
Publisher: Computer Vision Group Jena
DOI: 10.48550/arXiv.2307.11112