CORDIS provides links to public deliverables and publications of HORIZON projects.
Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .
Deliverables
D5.1: Linked to the activities of D7.5-7.6, report on consortium partners' response to the Access and Benefit Sharing (ABS) tool and associated guidelines on conformance to ABS standards. To aid this, provide access to an ABS tool and prototype the linking of this tool to the MGnify resource [T5.1].
BlueRemediomics calendar (opens in new window)D7.1: Establish a project calendar detailing dates for key periodic meetings, the final conference, deliverables deadlines, and project reporting deadlines [T7.1].
Sample list-initial (opens in new window)D2.1: Identify initial list of samples existing in partner culture collections for distribution, culturing and downstream screening. Where appropriate, genetic data will be passed to WP1, to be incorporated into catalogues [T2.1].
Plan for Dissemination, Exploitation and Communication-initial (opens in new window)D6.1: To ensure the outcomes and KERs of BlueRemediomics are effectively transferred, establish a clear Plan for Dissemination, Exploitation and Communication (PDEC) from the project outset. This will be presented to all partners to ensure acceptance [T6.1].
Carbon fixation models (opens in new window)D4.2: Report on the distribution and abundance of the eight known carbon fixation pathways in marine microbes, detailing each pathway’s contributions to carbon sinks. This report will be supplemented by the results from the verification of carbon fixing pathways using Cyclotella cryptica [T4.2].
D1.3: Produce the first set of eukaryotic metagenome assembled genomes (MAGs) in MGnify from marine assemblies. These will be functionally annotated and made available through the MGnify interfaces (website and API). Produce an updated set of bacterial MAGs from marine assemblies, annotated and released via MGnify [T1.2].
Additional metagenomic datasets added to database (opens in new window)D1.1: Identify additional marine and aquaculture datasets missing from MGnify and where appropriate, assemble and functionally annotate them and make them available via the MGnify website [T1.1].
D7.5: The internal document will outline the consortium's role in ensuring conformance to ABS, and equality diversity and inclusion (EDI) policies. The document will also outline our code of conduct. Elements of this document will be published on the website [T7.2].
Training guide (opens in new window)D7.7: All members of the consortium will be required to undertake basic training on ABS. This will help improve the understanding of each organisation’s requirements and responsibilities when sharing samples and data [T7.2].
D6.3: Dedicated project website, which will be used to promote project activities, achievements, provide relevant links to databases/dataset and link to project social media channels [T6.2].
D5.4: Address knowledge gaps of Competent National Authorities (CNAs). Develop an Access and Benefit Sharing (ABS) role playing game to allow participants to practice ABS negotiations using a large set of hypothetical scenarios based on different scientific practices [T5.3].
D7.2: Produce a working document that dynamically encapsulates how data should be managed during the project, including archiving of data in the public database beyond the lifetime of the project and adherence to FAIR principles, and where appropriate GDPR [T7.2].
Publications
Author(s):
Ross Vermeulen, Anton Du Preez van Staden, Tracey Ollewagen, Leonardo Joaquim van Zyl, Mae Newton-Foot, Youran Luo, Wilfred van der Donk, Leon Milner Theodore Dicks, Carine Smith, and Marla Trindade
Published in:
ACS Omega, 2024, ISSN 2470-1343
Publisher:
American Chemical Society (ACS)
DOI:
10.1021/ACSOMEGA.4C03149
Author(s):
Scarlett Sett, W. John Kress, Michael Halewood, David Nicholson, Genuar Nuñez-Vega, Davide Faggionato, Mathieu Rouard, Marcel Jaspars, Manuela da Silva, Christine Prat, Débora S. Raposo, Irma Klünker, Jens Freitag, Christian Keambou Tiambo, Carolina dos Santos Ribeiro, Linda Wong, Halima Benbouza, Jörg Overmann, null null, K. C. Bansal, Yiming Bao, Martha Lucía Cepeda-H, Solenne Correard, Sonigitu Ekpe, Desiree Hautea, Martine Hossaert-McKey, Takahide A. Ishida, Sally Katee, Harris Lewin, Ann M. Mc Cartney, Melania Muñoz-Garcia, Pablo Orozco, Michelle Rourke, Jens Sundström, Mutsuaki Suzuki, Rajeev Varshney, Elisa Vendramin, Ignazio Verde, Eizadora Yu, Maria Mercedes Zambrano, Amber Hartman Scholz
Published in:
Nature Communications, Issue 15, 2024, ISSN 2041-1723
Publisher:
Springer Science and Business Media LLC
DOI:
10.1038/S41467-024-52994-Z
Author(s):
Charlotte Nef; Juan José Pierella Karlusich; Chris Bowler
Published in:
Philosophical Transactions of the Royal Society B: Biological Sciences, 2024, ISSN 0962-8436
Publisher:
The Royal Society
DOI:
10.1098/RSTB.2023.0172
Author(s):
Federica Casolari; Amelia Westmoreland; Thomas Vanagt; Marcel Jaspars
Published in:
Natural Product Reports, 2025, ISSN 0265-0568
Publisher:
Royal Society of Chemistry
DOI:
10.1039/D4NP00070F
Author(s):
Godwin A. Aleku; Florian Hollfelder
Published in:
Chem Catalysis, 2024, ISSN 2667-1107
Publisher:
Chem Catal
DOI:
10.1016/J.CHECAT.2024.101160
Author(s):
Charlotte Blom, Marcel Jaspars, Jasmina Muminovic Rilak, Amber Hartman Scholz
Published in:
Nature Biotechnology, 2025, ISSN 1087-0156
Publisher:
Springer Science and Business Media LLC
DOI:
10.1038/S41587-025-02820-8
Author(s):
Pierella Karlusich, Juan; Cosnier, Karen; Zinger, Lucie; Henry, Nicolas; Nef, Charlotte; Bernard, Guillaume; Scalco, Eleonora; Dvorak, Etienne; Acinas, Silvia; Babin, Marcel; Bork, Peer; Boss, Emmanuel; Bowler, Chris; Cochrane, Guy; de Vargas, Colomban; Gorsky, Gabriel; Grimsley, Nigel; Guidi, Lionel; Iudicone, Daniele; Jaillon, Olivier; Kandels, Stefanie; Karp-Boss, Lee; Karsenti, Eric; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stéphane; Poulton, Nicole; Sardet, Christian; Speich, Sabrina; Stemmann, Lars; Sullivan, Matthew; Sunagawa, Shinichi; Wincker, Patrick; Rocha Jimenez Vieira, Fabio; Delage, Erwan; Chaffron, Samuel; Ovchinnikov, Sergey; Zingone, Adriana; Bowler, Chris
Published in:
Nature Communications, 2024, ISSN 2041-1723
Publisher:
Nature Communications
DOI:
10.1101/2024.06.08.598090
Author(s):
F. P. Martínez-Antequera, N. Gilannejad, S. Menanteau-Ledouble, M. Nilsen, M. E. Donovan, H. Sveier, J. M. Mancera, J. A. Martos-Sitcha, F. J. Moyano
Published in:
Journal of Applied Phycology, 2025, ISSN 0921-8971
Publisher:
Kluwer Academic Publishers
DOI:
10.1007/S10811-024-03440-6
Author(s):
Galgonek J, Vondrášek J
Published in:
Bioinformatics (Oxford, England), Issue Volume 40, Issue 4, 2024, ISSN 1367-4811
Publisher:
Oxford University Press
DOI:
10.1093/BIOINFORMATICS/BTAE174
Author(s):
Carole Duchêne; Jean-Pierre Bouly; Juan José Pierella Karlusich; Emeline Vernay; Julien Sellés; Benjamin Bailleul; Chris Bowler; Maurizio Ribera d’Alcalà; Angela Falciatore; Marianne Jaubert
Published in:
Nature, 2024, ISSN 1476-4687
Publisher:
Springer Science and Business Media LLC
DOI:
10.1038/S41586-024-08301-3
Author(s):
Katerina Jiraskova, Jakub Ptacek, Kristyna Vydra Bousova, Jiri Vondrasek
Published in:
Protein Expression and Purification, Issue 236, 2025, ISSN 1046-5928
Publisher:
Elsevier BV
DOI:
10.1016/J.PEP.2025.106801
Author(s):
Sanchez S, Rogers JD, Rogers AB, Nassar M, McEntyre J, Welch M, Hollfelder F, Finn RD
Published in:
bioRxiv, 2023, ISSN 2692-8205
Publisher:
Cold Spring Harbor Laboratory
DOI:
10.1101/2023.05.23.540769
Author(s):
Matthew Penner; Oskar James Klein; Maximilian Gantz; Friederike E. H. Nintzel; Anne-Cathrin Prowald; Sally Boss; Paul Barker; Paul Dupree; Florian Hollfelder
Published in:
Journal of the American Chemical Society, 2025
DOI:
10.1101/2023.11.22.568356
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