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CORDIS - Resultados de investigaciones de la UE
CORDIS

BlueRemediomics: Harnessing the marine microbiome for novel sustainable biogenics and ecosystem services

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Access and Benefit Sharing tools and guidelines (se abrirá en una nueva ventana)

D5.1: Linked to the activities of D7.5-7.6, report on consortium partners' response to the Access and Benefit Sharing (ABS) tool and associated guidelines on conformance to ABS standards. To aid this, provide access to an ABS tool and prototype the linking of this tool to the MGnify resource [T5.1].

BlueRemediomics calendar (se abrirá en una nueva ventana)

D7.1: Establish a project calendar detailing dates for key periodic meetings, the final conference, deliverables deadlines, and project reporting deadlines [T7.1].

Sample list-initial (se abrirá en una nueva ventana)

D2.1: Identify initial list of samples existing in partner culture collections for distribution, culturing and downstream screening. Where appropriate, genetic data will be passed to WP1, to be incorporated into catalogues [T2.1].

Plan for Dissemination, Exploitation and Communication-initial (se abrirá en una nueva ventana)

D6.1: To ensure the outcomes and KERs of BlueRemediomics are effectively transferred, establish a clear Plan for Dissemination, Exploitation and Communication (PDEC) from the project outset. This will be presented to all partners to ensure acceptance [T6.1].

Carbon fixation models (se abrirá en una nueva ventana)

D4.2: Report on the distribution and abundance of the eight known carbon fixation pathways in marine microbes, detailing each pathway’s contributions to carbon sinks. This report will be supplemented by the results from the verification of carbon fixing pathways using Cyclotella cryptica [T4.2].

MGnify database-initial (se abrirá en una nueva ventana)

D1.3: Produce the first set of eukaryotic metagenome assembled genomes (MAGs) in MGnify from marine assemblies. These will be functionally annotated and made available through the MGnify interfaces (website and API). Produce an updated set of bacterial MAGs from marine assemblies, annotated and released via MGnify [T1.2].

Additional metagenomic datasets added to database (se abrirá en una nueva ventana)

D1.1: Identify additional marine and aquaculture datasets missing from MGnify and where appropriate, assemble and functionally annotate them and make them available via the MGnify website [T1.1].

Consortium working guidelines document-initial (se abrirá en una nueva ventana)

D7.5: The internal document will outline the consortium's role in ensuring conformance to ABS, and equality diversity and inclusion (EDI) policies. The document will also outline our code of conduct. Elements of this document will be published on the website [T7.2].

Training guide (se abrirá en una nueva ventana)

D7.7: All members of the consortium will be required to undertake basic training on ABS. This will help improve the understanding of each organisation’s requirements and responsibilities when sharing samples and data [T7.2].

Project website (se abrirá en una nueva ventana)

D6.3: Dedicated project website, which will be used to promote project activities, achievements, provide relevant links to databases/dataset and link to project social media channels [T6.2].

Access and Benefit Sharing game (se abrirá en una nueva ventana)

D5.4: Address knowledge gaps of Competent National Authorities (CNAs). Develop an Access and Benefit Sharing (ABS) role playing game to allow participants to practice ABS negotiations using a large set of hypothetical scenarios based on different scientific practices [T5.3].

Data Management Plan-initial (se abrirá en una nueva ventana)

D7.2: Produce a working document that dynamically encapsulates how data should be managed during the project, including archiving of data in the public database beyond the lifetime of the project and adherence to FAIR principles, and where appropriate GDPR [T7.2].

Publicaciones

Initial Characterization of the Viridisins’ Biological Properties (se abrirá en una nueva ventana)

Autores: Ross Vermeulen, Anton Du Preez van Staden, Tracey Ollewagen, Leonardo Joaquim van Zyl, Mae Newton-Foot, Youran Luo, Wilfred van der Donk, Leon Milner Theodore Dicks, Carine Smith, and Marla Trindade
Publicado en: ACS Omega, 2024, ISSN 2470-1343
Editor: American Chemical Society (ACS)
DOI: 10.1021/ACSOMEGA.4C03149

Harmonize rules for digital sequence information benefit-sharing across UN frameworks (se abrirá en una nueva ventana)

Autores: Scarlett Sett, W. John Kress, Michael Halewood, David Nicholson, Genuar Nuñez-Vega, Davide Faggionato, Mathieu Rouard, Marcel Jaspars, Manuela da Silva, Christine Prat, Débora S. Raposo, Irma Klünker, Jens Freitag, Christian Keambou Tiambo, Carolina dos Santos Ribeiro, Linda Wong, Halima Benbouza, Jörg Overmann, null null, K. C. Bansal, Yiming Bao, Martha Lucía Cepeda-H, Solenne Correard, Sonigitu Ekpe, Desiree Hautea, Martine Hossaert-McKey, Takahide A. Ishida, Sally Katee, Harris Lewin, Ann M. Mc Cartney, Melania Muñoz-Garcia, Pablo Orozco, Michelle Rourke, Jens Sundström, Mutsuaki Suzuki, Rajeev Varshney, Elisa Vendramin, Ignazio Verde, Eizadora Yu, Maria Mercedes Zambrano, Amber Hartman Scholz
Publicado en: Nature Communications, Edición 15, 2024, ISSN 2041-1723
Editor: Springer Science and Business Media LLC
DOI: 10.1038/S41467-024-52994-Z

Philosophical Transactions of the Royal Society B: Biological Sciences (se abrirá en una nueva ventana)

Autores: Charlotte Nef; Juan José Pierella Karlusich; Chris Bowler
Publicado en: Philosophical Transactions of the Royal Society B: Biological Sciences, 2024, ISSN 0962-8436
Editor: The Royal Society
DOI: 10.1098/RSTB.2023.0172

Natural Product Reports (se abrirá en una nueva ventana)

Autores: Federica Casolari; Amelia Westmoreland; Thomas Vanagt; Marcel Jaspars
Publicado en: Natural Product Reports, 2025, ISSN 0265-0568
Editor: Royal Society of Chemistry
DOI: 10.1039/D4NP00070F

Expanding the repertoire of imine reductases by mining divergent biosynthetic pathways for promiscuous reactivity (se abrirá en una nueva ventana)

Autores: Godwin A. Aleku; Florian Hollfelder
Publicado en: Chem Catalysis, 2024, ISSN 2667-1107
Editor: Chem Catal
DOI: 10.1016/J.CHECAT.2024.101160

From frameworks to finance: how sharing benefits from the use of digital sequence information can evolve to contribute to biodiversity conservation (se abrirá en una nueva ventana)

Autores: Charlotte Blom, Marcel Jaspars, Jasmina Muminovic Rilak, Amber Hartman Scholz
Publicado en: Nature Biotechnology, 2025, ISSN 1087-0156
Editor: Springer Science and Business Media LLC
DOI: 10.1038/S41587-025-02820-8

Nature Communications (se abrirá en una nueva ventana)

Autores: Pierella Karlusich, Juan; Cosnier, Karen; Zinger, Lucie; Henry, Nicolas; Nef, Charlotte; Bernard, Guillaume; Scalco, Eleonora; Dvorak, Etienne; Acinas, Silvia; Babin, Marcel; Bork, Peer; Boss, Emmanuel; Bowler, Chris; Cochrane, Guy; de Vargas, Colomban; Gorsky, Gabriel; Grimsley, Nigel; Guidi, Lionel; Iudicone, Daniele; Jaillon, Olivier; Kandels, Stefanie; Karp-Boss, Lee; Karsenti, Eric; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stéphane; Poulton, Nicole; Sardet, Christian; Speich, Sabrina; Stemmann, Lars; Sullivan, Matthew; Sunagawa, Shinichi; Wincker, Patrick; Rocha Jimenez Vieira, Fabio; Delage, Erwan; Chaffron, Samuel; Ovchinnikov, Sergey; Zingone, Adriana; Bowler, Chris
Publicado en: Nature Communications, 2024, ISSN 2041-1723
Editor: Nature Communications
DOI: 10.1101/2024.06.08.598090

Journal of Applied Phycology (se abrirá en una nueva ventana)

Autores: F. P. Martínez-Antequera, N. Gilannejad, S. Menanteau-Ledouble, M. Nilsen, M. E. Donovan, H. Sveier, J. M. Mancera, J. A. Martos-Sitcha, F. J. Moyano
Publicado en: Journal of Applied Phycology, 2025, ISSN 0921-8971
Editor: Kluwer Academic Publishers
DOI: 10.1007/S10811-024-03440-6

The IDSM mass spectrometry extension: searching mass spectra using SPARQL (se abrirá en una nueva ventana)

Autores: Galgonek J, Vondrášek J
Publicado en: Bioinformatics (Oxford, England), Edición Volume 40, Edición 4, 2024, ISSN 1367-4811
Editor: Oxford University Press
DOI: 10.1093/BIOINFORMATICS/BTAE174

Diatom phytochromes integrate the underwater light spectrum to sense depth (se abrirá en una nueva ventana)

Autores: Carole Duchêne; Jean-Pierre Bouly; Juan José Pierella Karlusich; Emeline Vernay; Julien Sellés; Benjamin Bailleul; Chris Bowler; Maurizio Ribera d’Alcalà; Angela Falciatore; Marianne Jaubert
Publicado en: Nature, 2024, ISSN 1476-4687
Editor: Springer Science and Business Media LLC
DOI: 10.1038/S41586-024-08301-3

Toward reproducible PETase research: A standardized workflow for reliable enzyme production and comparison (se abrirá en una nueva ventana)

Autores: Katerina Jiraskova, Jakub Ptacek, Kristyna Vydra Bousova, Jiri Vondrasek
Publicado en: Protein Expression and Purification, Edición 236, 2025, ISSN 1046-5928
Editor: Elsevier BV
DOI: 10.1016/J.PEP.2025.106801

Expansion of novel biosynthetic gene clusters from diverse environments using SanntiS (se abrirá en una nueva ventana)

Autores: Sanchez S, Rogers JD, Rogers AB, Nassar M, McEntyre J, Welch M, Hollfelder F, Finn RD
Publicado en: bioRxiv, 2023, ISSN 2692-8205
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/2023.05.23.540769

Fluorogenic, Subsingle-Turnover Monitoring of Enzymatic Reactions Involving NAD(P)H Provides a Generalized Platform for Directed Ultrahigh-Throughput Evolution of Biocatalysts in Microdroplets (se abrirá en una nueva ventana)

Autores: Matthew Penner; Oskar James Klein; Maximilian Gantz; Friederike E. H. Nintzel; Anne-Cathrin Prowald; Sally Boss; Paul Barker; Paul Dupree; Florian Hollfelder
Publicado en: Journal of the American Chemical Society, 2025
DOI: 10.1101/2023.11.22.568356

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