BlueRemediomics: Harnessing the marine microbiome for novel sustainable biogenics and ecosystem services

Projektinformationen

BlueRemediomics

ID Finanzhilfevereinbarung: 101082304

DOI

10.3030/101082304

EK-Unterschriftsdatum 7 Oktober 2022

Startdatum 1 Dezember 2022

Enddatum 30 November 2026

Finanziert unter

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Gesamtkosten

€ 7 683 577,50

EU-Beitrag

€ 7 649 827,50

Koordiniert durch

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Germany

CORDIS bietet Links zu öffentlichen Ergebnissen und Veröffentlichungen von HORIZONT-Projekten.

Links zu Ergebnissen und Veröffentlichungen von RP7-Projekten sowie Links zu einigen Typen spezifischer Ergebnisse wie Datensätzen und Software werden dynamisch von OpenAIRE abgerufen.

Leistungen

Documents, reports (5)

Access and Benefit Sharing tools and guidelines

D5.1: Linked to the activities of D7.5-7.6, report on consortium partners' response to the Access and Benefit Sharing (ABS) tool and associated guidelines on conformance to ABS standards. To aid this, provide access to an ABS tool and prototype the linking of this tool to the MGnify resource [T5.1].

BlueRemediomics calendar

D7.1: Establish a project calendar detailing dates for key periodic meetings, the final conference, deliverables deadlines, and project reporting deadlines [T7.1].

Sample list-initial

D2.1: Identify initial list of samples existing in partner culture collections for distribution, culturing and downstream screening. Where appropriate, genetic data will be passed to WP1, to be incorporated into catalogues [T2.1].

Plan for Dissemination, Exploitation and Communication-initial

D6.1: To ensure the outcomes and KERs of BlueRemediomics are effectively transferred, establish a clear Plan for Dissemination, Exploitation and Communication (PDEC) from the project outset. This will be presented to all partners to ensure acceptance [T6.1].

Carbon fixation models

D4.2: Report on the distribution and abundance of the eight known carbon fixation pathways in marine microbes, detailing each pathway’s contributions to carbon sinks. This report will be supplemented by the results from the verification of carbon fixing pathways using Cyclotella cryptica [T4.2].

Data sets, microdata, etc (2)

MGnify database-initial

D1.3: Produce the first set of eukaryotic metagenome assembled genomes (MAGs) in MGnify from marine assemblies. These will be functionally annotated and made available through the MGnify interfaces (website and API). Produce an updated set of bacterial MAGs from marine assemblies, annotated and released via MGnify [T1.2].

Additional metagenomic datasets added to database

D1.1: Identify additional marine and aquaculture datasets missing from MGnify and where appropriate, assemble and functionally annotate them and make them available via the MGnify website [T1.1].

Other (2)

Consortium working guidelines document-initial

D7.5: The internal document will outline the consortium's role in ensuring conformance to ABS, and equality diversity and inclusion (EDI) policies. The document will also outline our code of conduct. Elements of this document will be published on the website [T7.2].

Training guide

D7.7: All members of the consortium will be required to undertake basic training on ABS. This will help improve the understanding of each organisation’s requirements and responsibilities when sharing samples and data [T7.2].

Websites, patent fillings, videos etc. (1)

Project website

D6.3: Dedicated project website, which will be used to promote project activities, achievements, provide relevant links to databases/dataset and link to project social media channels [T6.2].

Demonstrators, pilots, prototypes (1)

Access and Benefit Sharing game

D5.4: Address knowledge gaps of Competent National Authorities (CNAs). Develop an Access and Benefit Sharing (ABS) role playing game to allow participants to practice ABS negotiations using a large set of hypothetical scenarios based on different scientific practices [T5.3].

Data Management Plan (1)

Data Management Plan-initial

D7.2: Produce a working document that dynamically encapsulates how data should be managed during the project, including archiving of data in the public database beyond the lifetime of the project and adherence to FAIR principles, and where appropriate GDPR [T7.2].

Veröffentlichungen

Peer reviewed articles (11)

Initial Characterization of the Viridisins’ Biological Properties

Autoren: Ross Vermeulen, Anton Du Preez van Staden, Tracey Ollewagen, Leonardo Joaquim van Zyl, Mae Newton-Foot, Youran Luo, Wilfred van der Donk, Leon Milner Theodore Dicks, Carine Smith, and Marla Trindade
Veröffentlicht in: ACS Omega, 2024, ISSN 2470-1343
Herausgeber: American Chemical Society (ACS)
DOI: 10.1021/ACSOMEGA.4C03149

Harmonize rules for digital sequence information benefit-sharing across UN frameworks

Autoren: Scarlett Sett, W. John Kress, Michael Halewood, David Nicholson, Genuar Nuñez-Vega, Davide Faggionato, Mathieu Rouard, Marcel Jaspars, Manuela da Silva, Christine Prat, Débora S. Raposo, Irma Klünker, Jens Freitag, Christian Keambou Tiambo, Carolina dos Santos Ribeiro, Linda Wong, Halima Benbouza, Jörg Overmann, null null, K. C. Bansal, Yiming Bao, Martha Lucía Cepeda-H, Solenne Correard, Sonigitu Ekpe, Desiree Hautea, Martine Hossaert-McKey, Takahide A. Ishida, Sally Katee, Harris Lewin, Ann M. Mc Cartney, Melania Muñoz-Garcia, Pablo Orozco, Michelle Rourke, Jens Sundström, Mutsuaki Suzuki, Rajeev Varshney, Elisa Vendramin, Ignazio Verde, Eizadora Yu, Maria Mercedes Zambrano, Amber Hartman Scholz
Veröffentlicht in: Nature Communications, Ausgabe 15, 2024, ISSN 2041-1723
Herausgeber: Springer Science and Business Media LLC
DOI: 10.1038/S41467-024-52994-Z

Philosophical Transactions of the Royal Society B: Biological Sciences

Autoren: Charlotte Nef; Juan José Pierella Karlusich; Chris Bowler
Veröffentlicht in: Philosophical Transactions of the Royal Society B: Biological Sciences, 2024, ISSN 0962-8436
Herausgeber: The Royal Society
DOI: 10.1098/RSTB.2023.0172

Natural Product Reports

Autoren: Federica Casolari; Amelia Westmoreland; Thomas Vanagt; Marcel Jaspars
Veröffentlicht in: Natural Product Reports, 2025, ISSN 0265-0568
Herausgeber: Royal Society of Chemistry
DOI: 10.1039/D4NP00070F

Expanding the repertoire of imine reductases by mining divergent biosynthetic pathways for promiscuous reactivity

Autoren: Godwin A. Aleku; Florian Hollfelder
Veröffentlicht in: Chem Catalysis, 2024, ISSN 2667-1107
Herausgeber: Chem Catal
DOI: 10.1016/J.CHECAT.2024.101160

From frameworks to finance: how sharing benefits from the use of digital sequence information can evolve to contribute to biodiversity conservation

Autoren: Charlotte Blom, Marcel Jaspars, Jasmina Muminovic Rilak, Amber Hartman Scholz
Veröffentlicht in: Nature Biotechnology, 2025, ISSN 1087-0156
Herausgeber: Springer Science and Business Media LLC
DOI: 10.1038/S41587-025-02820-8

Nature Communications

Autoren: Pierella Karlusich, Juan; Cosnier, Karen; Zinger, Lucie; Henry, Nicolas; Nef, Charlotte; Bernard, Guillaume; Scalco, Eleonora; Dvorak, Etienne; Acinas, Silvia; Babin, Marcel; Bork, Peer; Boss, Emmanuel; Bowler, Chris; Cochrane, Guy; de Vargas, Colomban; Gorsky, Gabriel; Grimsley, Nigel; Guidi, Lionel; Iudicone, Daniele; Jaillon, Olivier; Kandels, Stefanie; Karp-Boss, Lee; Karsenti, Eric; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stéphane; Poulton, Nicole; Sardet, Christian; Speich, Sabrina; Stemmann, Lars; Sullivan, Matthew; Sunagawa, Shinichi; Wincker, Patrick; Rocha Jimenez Vieira, Fabio; Delage, Erwan; Chaffron, Samuel; Ovchinnikov, Sergey; Zingone, Adriana; Bowler, Chris
Veröffentlicht in: Nature Communications, 2024, ISSN 2041-1723
Herausgeber: Nature Communications
DOI: 10.1101/2024.06.08.598090

Journal of Applied Phycology

Autoren: F. P. Martínez-Antequera, N. Gilannejad, S. Menanteau-Ledouble, M. Nilsen, M. E. Donovan, H. Sveier, J. M. Mancera, J. A. Martos-Sitcha, F. J. Moyano
Veröffentlicht in: Journal of Applied Phycology, 2025, ISSN 0921-8971
Herausgeber: Kluwer Academic Publishers
DOI: 10.1007/S10811-024-03440-6

The IDSM mass spectrometry extension: searching mass spectra using SPARQL

Autoren: Galgonek J, Vondrášek J
Veröffentlicht in: Bioinformatics (Oxford, England), Ausgabe Volume 40, Ausgabe 4, 2024, ISSN 1367-4811
Herausgeber: Oxford University Press
DOI: 10.1093/BIOINFORMATICS/BTAE174

Diatom phytochromes integrate the underwater light spectrum to sense depth

Autoren: Carole Duchêne; Jean-Pierre Bouly; Juan José Pierella Karlusich; Emeline Vernay; Julien Sellés; Benjamin Bailleul; Chris Bowler; Maurizio Ribera d’Alcalà; Angela Falciatore; Marianne Jaubert
Veröffentlicht in: Nature, 2024, ISSN 1476-4687
Herausgeber: Springer Science and Business Media LLC
DOI: 10.1038/S41586-024-08301-3

Toward reproducible PETase research: A standardized workflow for reliable enzyme production and comparison

Autoren: Katerina Jiraskova, Jakub Ptacek, Kristyna Vydra Bousova, Jiri Vondrasek
Veröffentlicht in: Protein Expression and Purification, Ausgabe 236, 2025, ISSN 1046-5928
Herausgeber: Elsevier BV
DOI: 10.1016/J.PEP.2025.106801

Other (2)

Expansion of novel biosynthetic gene clusters from diverse environments using SanntiS

Autoren: Sanchez S, Rogers JD, Rogers AB, Nassar M, McEntyre J, Welch M, Hollfelder F, Finn RD
Veröffentlicht in: bioRxiv, 2023, ISSN 2692-8205
Herausgeber: Cold Spring Harbor Laboratory
DOI: 10.1101/2023.05.23.540769

Fluorogenic, Subsingle-Turnover Monitoring of Enzymatic Reactions Involving NAD(P)H Provides a Generalized Platform for Directed Ultrahigh-Throughput Evolution of Biocatalysts in Microdroplets

Autoren: Matthew Penner; Oskar James Klein; Maximilian Gantz; Friederike E. H. Nintzel; Anne-Cathrin Prowald; Sally Boss; Paul Barker; Paul Dupree; Florian Hollfelder
Veröffentlicht in: Journal of the American Chemical Society, 2025
DOI: 10.1101/2023.11.22.568356