HetERogeneous sEmantic Data integratIon for the guT-bRain interplaY

Binomial Confidence Intervals for Knowledge Graph Accuracy Estimation (Extended Abstract)

Author(s): Marchesin, Stefano; Silvello, Gianmaria
Published in: SEBD 2025, 2025
Publisher: Ceur-Ws
DOI: 10.5281/ZENODO.15745400

Utility-Oriented Knowledge Graph Accuracy Estimation with LimitedAnnotations: A Case Study on DBpedia

Author(s): Marchesin, Stefano; Silvello, Gianmaria; Alonso, Omar
Published in: HCOMP 2024, 2024
Publisher: AAAI
DOI: 10.1609/hcomp.v12i1.31605

Extending Nanopublications with Knowledge Provenance for Multi-Source Scientific Assertions

Author(s): Fabio Giachelle, Stefano Marchesin, Laura Menotti, and Gianmaria Silvello
Published in: IRCDL 2025, 2025
Publisher: CEUR

Constrained Linked Entity ANnotation using RAG (CLEANR)

Author(s): B. Kantz, S. Lengauer, P. Waldert, T. Schreck
Published in: CLEF 2025 BioASQ Report Paper for Task GutBrainIE on Gut-Brain Interplay Information Extraction, 2025
Publisher: CEUR Workshop Proceedings

Doctron: A Web-based Collaborative Annotation Tool for Ground Truth Creation in IR

Author(s): Ornella Irrera, Stefano Marchesin, Farzad Shami, Gianmaria Silvello
Published in: Proceedings of the 48th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2025
Publisher: ACM
DOI: 10.1145/3726302.3730286

MetaTron: Streamlining Collaborative Annotation for Biomedical Documents

Author(s): Irrera, Ornella; Marchesin, Stefano; Silvello, Gianmaria
Published in: SWAT4HCLS, 2025
Publisher: Arxiv
DOI: 10.5281/ZENODO.15656043

Advancing Inclusivity in a Medical Terminology Resource concerning the Gut-Brain Interplay: Insights from the HEREDITARY Project

Author(s): Vanessa Bonato, Federica Vezzani, Giorgio Maria Di Nunzio
Published in: Semmelweis Medical Linguistics Conference 2025 Inclusivity and Diversity in Healthcare Communication Research, 2025
Publisher: in press

Reusability of Biomedical Annotations for Gut-Brain Interplay Information Extraction as Terminological Data

Author(s): Vanessa Bonato
Published in: MDTT 2025, 2025
Publisher: CEUR-WS

Consumer-Centered Technology-Assisted Review: Insights and Challenges from the CLEF eHealth Tasks

Author(s): Giorgio Maria Di Nunzio
Published in: Semmelweis Medical Linguistics Conference 2025 Inclusivity and Diversity in Healthcare Communication Research, 2025
Publisher: in press

Reproducibility and Analysis of Scientific Dataset Recommendation Methods

Author(s): Ornella Irrera; Matteo Lissandrini; Daniele Dell'Aglio; Gianmaria Silvello
Published in: 18th ACM Conference on Recommender Systems, 2024
Publisher: ACM Press
DOI: 10.1145/3640457.3688071

Publishing CoreKB Facts as Nanopublications

Author(s): Fabio Giachelle; Stefano Marchesin; Laura Menotti; Gianmaria Silvello
Published in: IRCDL 2024, 2024, ISSN 1613-0073
Publisher: CEUR

Exploring Terminological Collocations in Biomedical Texts

Author(s): Costa, Rute; Ramos, Margarida; Canelas, Matilde; Mouro, Ana
Published in: MDTT 2025, 2025
Publisher: Ceur-Ws
DOI: 10.5281/ZENODO.15863151

BioASQ at CLEF2025: The Thirteenth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge

Author(s): Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Martin Krallinger, Miguel Rodriguez Ortega, Natalia Loukachevitch, Andrey Sakhovskiy, Elena Tutubalina, Grigorios Tsoumakas, George Giannakoulas, Alexandra Bekiaridou, Athanasios Samaras, Giorgio Maria Di Nunzio, Nicola Ferro, Stefano Marchesin, Laura Menotti, Gianmaria Silvello, Georgios Paliouras
Published in: Lecture Notes in Computer Science, Advances in Information Retrieval, 2025
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-88720-8_61

Veracity Estimation for Entity-Oriented Search with Knowledge Graphs

Author(s): Marchesin, Stefano; Silvello, Gianmaria; Alonso, Omar
Published in: CIKM 2024, 2024
Publisher: ACM
DOI: 10.1145/3627673.3679561

FAIR Terminology Meets CLEAR Global

Author(s): Giorgio Maria Di Nunzio, Eszter Papp, Federica Vezzani, Ellie Kemp
Published in: Lecture Notes in Computer Science, Linking Theory and Practice of Digital Libraries, 2024
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72440-4_17

Fact Verification in Knowledge Graphs Using LLMs

Author(s): Farzad Shami, Stefano Marchesin, and Gianmaria Silvello
Published in: SIGIR 2025, 2025
Publisher: THE 48TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL
DOI: 10.1145/3726302.3730142

The Elephant in the Room: The Impact of Domain-Expert (Dis)agreement. A Case Study on Cryptic Species

Author(s): Giorgio Maria Di Nunzio, Lucia Manni, Emanuela De Lisa, Federica Vezzani
Published in: MDTT 2025, 2025
Publisher: CEUR-WS

A Marker Design for visually enhancing Local Cluster Association

Author(s): S. Lengauer, P. Waldert, T. Schreck
Published in: IEEE VIS 2024 Bio+MedVis Challenge, 2024
Publisher: Zenodo

OnSET: Ontology and Semantic Exploration Toolkit

Author(s): B. Kantz, K. Innerebner, P. Waldert, S. Lengauer, E. Lex, T. Schreck
Published in: ACM SIGIR 2025 Proceedings, 2025
Publisher: ACM

Behavioral Clusters and Lesion Distributions in Ischemic Stroke, Based on NIHSS Similarity Network

Author(s): Louis Fabrice Tshimanga; Andrea Zanola; Silvia Facchini; Antonio Luigi Bisogno; Lorenzo Pini; Manfredo Atzori; Maurizio Corbetta
Published in: Journal of Healthcare Informatics Research, 2023, ISSN 2509-498X
Publisher: Journal of Healthcare Informatics Research
DOI: 10.1101/2023.11.08.23297808

BMC Bioinformatics

Author(s): Ornella Irrera; Stefano Marchesin; Gianmaria Silvello
Published in: BMC Bioinformatics, Issue 25(112), 2024, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/S12859-024-05730-9

Efficient and Reliable Estimation of Knowledge Graph Accuracy

Author(s): Stefano Marchesin; Gianmaria Silvello
Published in: PVLDB, Issue 17(9), 2024, ISSN 2150-8097
Publisher: VLDB Endowment
DOI: 10.14778/3665844.3665865

Changes to Average Survival of Patients With Amyotrophic Lateral Sclerosis (1995–2018)

Author(s): Rosario Vasta, Filippo De Mattei, Salvatore Tafaro, Antonio Canosa, Umberto Manera, Maurizio Grassano, Francesca Palumbo, Sara Cabras, Enrico Matteoni, Francesca Di Pede, Grazia Zocco, Giorgio Pellegrino, Emilio Minerva, Daniela Pascariu, Barbara Iazzolino, Stefano Callegaro, Giuseppe Fuda, Paolina Salamone, Fabiola De Marchi, Letizia Mazzini, Cristina Moglia, Andrea Calvo, Adriano Chiò
Published in: Neurology, Issue 104, 2025, ISSN 0028-3878
Publisher: Ovid Technologies (Wolters Kluwer Health)
DOI: 10.1212/WNL.0000000000213467

Credible Intervals for Knowledge Graph Accuracy Estimation

Author(s): Stefano Marchesin, Gianmaria Silvello
Published in: Proceedings of the ACM on Management of Data, Issue 3, 2025, ISSN 2836-6573
Publisher: Association for Computing Machinery (ACM)
DOI: 10.1145/3725279

The More, the Better? Evaluating the Role of EEG Preprocessing for Deep Learning Applications

Author(s): Federico Del Pup, Andrea Zanola, Louis Fabrice Tshimanga, Alessandra Bertoldo, Manfredo Atzori
Published in: IEEE Transactions on Neural Systems and Rehabilitation Engineering, Issue 33, 2025, ISSN 1534-4320
Publisher: Institute of Electrical and Electronics Engineers (IEEE)
DOI: 10.1109/TNSRE.2025.3547616

An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology

Author(s): Guglielmo Faggioli, Laura Menotti, Stefano Marchesin, Adriano Chió, Arianna Dagliati, Mamede de Carvalho, Marta Gromicho, Umberto Manera, Eleonora Tavazzi, Giorgio Maria Di Nunzio, Gianmaria Silvello, Nicola Ferro
Published in: Journal of Biomedical Semantics, Issue 15, 2024, ISSN 2041-1480
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/S13326-024-00317-Y

Le rôle du référent en terminologie : enquête sur la perception du trouble dysmorphique corporel

Author(s): Federica Vezzani; Rute Costa
Published in: Roczniki Humanistyczne, 2024, ISSN 0035-7707
Publisher: Towarzystwo Naukowe Kul & Katolicki Uniwersytet Lubelski Jana Pawła II – Wydział Nauk Humanistycznych
DOI: 10.18290/RH24728.5

Variation in psychopathological terminology

Author(s): Federica Vezzani, Rute Costa
Published in: Terminology. International Journal of Theoretical and Applied Issues in Specialized Communication, Terminology / International Journal of Theoretical and Applied Issues in Specialized Communication, Terminology, Issue 30, 2024, ISSN 0929-9971
Publisher: John Benjamins Publishing Company
DOI: 10.1075/TERM.00078.VEZ

Phosphatemia is an Independent Prognostic Factor in Amyotrophic Lateral Sclerosis

Author(s): Vasta, Rosario; Koumantakis, Emanuele; Canosa, Antonio; Manera, Umberto; Grassano, Maurizio; Palumbo, Francesca; Cabras, Sara; Matteoni, Enrico; Di Pede, Francesca; De Mattei, Filippo; Vergnano, Filippo; Mandrioli, Jessica; Simonini, Cecilia; Martinelli, Ilaria; De Marchi, Fabiola; Mazzini, Letizia; Moglia, Cristina; Calvo, Andrea; Chiò, Adriano
Published in: Annals of Neurology, 2025, ISSN 1531-8249
Publisher: Wiley
DOI: 10.1002/ANA.27252

When LMF and TMF meet

Author(s): Federica Vezzani, Giorgio Maria Di Nunzio, Ana Salgado, Rute Costa
Published in: Terminology. International Journal of Theoretical and Applied Issues in Specialized Communication, Terminology / International Journal of Theoretical and Applied Issues in Specialized Communication, Terminology, Issue 31, 2025, ISSN 0929-9971
Publisher: John Benjamins Publishing Company
DOI: 10.1075/TERM.00084.VEZ

Exploring Publicly Accessible Optical Coherence Tomography Datasets: A Comprehensive Overview

Author(s): Anastasiia Rozhyna; Gábor Márk Somfai; Manfredo Atzori; Delia Cabrera DeBuc; Amr Saad; Jay Zoellin; Henning Müller
Published in: Diagnostics, 2024, ISSN 2075-4418
Publisher: MDPI
DOI: 10.3390/DIAGNOSTICS14151668

MetaTron: advancing biomedical annotation empowering relation annotation and collaboration

Author(s): Ornella Irrera, Stefano Marchesin, Gianmaria Silvello
Published in: BMC Bioinformatics, Issue 25, 2024, ISSN 1471-2105
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/S12859-024-05730-9

Toward improving reproducibility in neuroimaging deep learning studies

Author(s): Federico Del Pup; Federico Del Pup; Federico Del Pup; Manfredo Atzori; Manfredo Atzori; Manfredo Atzori
Published in: Frontiers in Neuroscience, 2024, ISSN 1662-453X
Publisher: Frontiers
DOI: 10.3389/FNINS.2024.1509358

SelfEEG: A Python library for Self-Supervised Learning in Electroencephalography

Author(s): Federico Del Pup; Andrea Zanola; Louis Fabrice Tshimanga; Paolo Emilio Mazzon; Manfredo Atzori
Published in: The Journal of Open Source Software, Issue 9(95), 2024, ISSN 2475-9066
Publisher: Journal of Open Source Software
DOI: 10.48550/arxiv.2401.05405

BIDSAlign: a library for automatic merging and preprocessing of multiple EEG repositories

Author(s): Andrea Zanola; Federico Del Pup; Camillo Porcaro; Manfredo Atzori
Published in: Journal of Neural Engineering, 2024, ISSN 1741-2552
Publisher: Springer
DOI: 10.1088/1741-2552/AD6A8C

The role of data partitioning on the performance of EEG-based deep learning models in supervised cross-subject analysis: A preliminary study

Author(s): Federico Del Pup, Andrea Zanola, Louis Fabrice Tshimanga, Alessandra Bertoldo, Livio Finos, Manfredo Atzori
Published in: Computers in Biology and Medicine, Issue 196, 2025, ISSN 0010-4825
Publisher: Elsevier BV
DOI: 10.1016/J.COMPBIOMED.2025.110608

Can We Measure the Impact of a Database?

Author(s): Peter Buneman, Dennis Dosso, Matteo Lissandrini, Gianmaria Silvello, He Sun
Published in: Communications of the ACM, Issue 68, 2025, ISSN 0001-0782
Publisher: Association for Computing Machinery (ACM)
DOI: 10.1145/3704723

Content-Based Dataset Retrieval Methods: Reproducibility of the ACORDAR Test Collection

Author(s): Laura Menotti, Manuel Barusco, Riccardo Forzan, Gianmaria Silvello
Published in: Lecture Notes in Computer Science, Linking Theory and Practice of Digital Libraries, 2024
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72437-4_18

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