Assessing, preserving and restoring man-microbes symbiosis

Project Information

Homo.symbiosus

Grant agreement ID: 788191

DOI

10.3030/788191

Project closed

EC signature date 6 November 2018

Start date 1 January 2019

End date 31 December 2024

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 2 491 014,00

EU contribution

€ 2 491 014,00

Coordinated by

INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT
France

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (19)

Temporary dietary fiber depletion prompts rapid and lasting gut microbiota restructuring in mice

Author(s): Colombe Rous, Julie Cadiou, Hiba Yazbek, Elena Monzel, Mahesh S. Desai, Joel Doré, Maarten van de Guchte, Stanislas Mondot
Published in: Microbiology Spectrum, Issue 13, 2025, ISSN 2165-0497
Publisher: American Society for Microbiology
DOI: 10.1128/spectrum.01517-24

Microbiome testing in Europe: navigating analytical, ethical and regulatory challenges

Author(s): Julie Rodriguez, Magali Cordaillat-Simmons, Nelly Badalato, Bernard Berger, Heloise Breton, Raynald de Lahondès, Mélanie Deschasaux-Tanguy, Clara Desvignes, Camille D’Humières, Stephan Kampshoff, Aonghus Lavelle, Amira Metwaly, Narciso M. Quijada, Jos F. M. L. Seegers, Austin Udocor, Hub Zwart, null null, Alessio Fasano, Federica Carraturo, Jonel Trebicka, Yolanda Godoy, Robert Schierwagen, P
Published in: Microbiome, Issue 12, 2024, ISSN 2049-2618
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/s40168-024-01991-x

Anorexia nervosa and gut microbiota: A systematic review and quantitative synthesis of pooled microbiological data

Author(s): Laura Di Lodovico, Stanislas Mondot, Joël Doré, Isabelle Mack, Mouna Hanachi, Philip Gorwood
Published in: Progress in Neuro-Psychopharmacology and Biological Psychiatry, 2020, Page(s) 110114, ISSN 0278-5846
Publisher: Elsevier BV
DOI: 10.1016/j.pnpbp.2020.110114

Roseburia, a decreased bacterial taxon in the gut microbiota of patients suffering from anorexia nervosa

Author(s): Stanislas Mondot, Laurine Lachkar, Joël Doré, Hervé M. Blottière, Mouna Hanachi
Published in: European Journal of Clinical Nutrition, Issue 76, 2022, Page(s) 1486-1489, ISSN 0954-3007
Publisher: Nature Publishing Group
DOI: 10.1038/s41430-022-01116-3

Effects of isolation and confinement on gastrointestinal microbiota–a systematic review

Author(s): Bea Klos, Christina Steinbach, Jasmin Ketel, Claude Lambert, John Penders, Joël Doré, Paul Enck, Isabelle Mack
Published in: Frontiers in Nutrition, Issue 10, 2023, ISSN 2296-861X
Publisher: Frontiers Media SA
DOI: 10.3389/fnut.2023.1214016

Human-microbes symbiosis in health and disease, on earth and beyond planetary boundaries

Author(s): Joel Doré, Sandra Ortega Ugalde
Published in: Frontiers in Astronomy and Space Sciences, Issue 10, 2023, ISSN 2296-987X
Publisher: Frontiers Media SA
DOI: 10.3389/fspas.2023.1180522

Multicenter evaluation of gut microbiome profiling by next-generation sequencing reveals major biases in partial-length metabarcoding approach

Author(s): Hugo Roume, Stanislas Mondot, Adrien Saliou, Sophie Le Fresne-Languille, Joël Doré
Published in: Scientific Reports, Issue 13, 2023, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-023-46062-7

Diet, fruit and vegetables and One Health: benefits for health, environment, society and the consumer—proceedings of the 9th edition of EGEA conference

Author(s): Nathalie Komati, Elio Riboli, Joël Dore, Emma Boyland, Jean-Pierre Cravedi, Frans Folkvord, Jean-Michel Lecerf, Françoise Lescourret, Alain Peeters, Christian Reynolds, Benjamin Alles, Marie-Josèphe Amiot, Philippe Binard, Nathalie Delzenne, Nita Forouhi, Céline Giner, Boitshepo Giyose, Carmen Gloria Gonzalez, Marc J. Gunter, Rémi Kahane, Anna Herforth, Roel Hermans, Diego S. Intrigliolo, Giu
Published in: European Journal of Nutrition, Issue 64, 2025, ISSN 1436-6207
Publisher: Dr. Dietrich Steinkopff Verlag
DOI: 10.1007/s00394-025-03610-3

Increasing the diversity of dietary fibers in a daily-consumed bread modifies gut microbiota and metabolic profile in subjects at cardiometabolic risk

Author(s): Harimalala Ranaivo, Florence Thirion, Christel Béra-Maillet, Susie Guilly, Chantal Simon, Monique Sothier, Laurie Van Den Berghe, Nathalie Feugier-Favier, Stéphanie Lambert-Porcheron, Isabelle Dussous, Loïc Roger, Hugo Roume, Nathalie Galleron, Nicolas Pons, Emmanuelle Le Chatelier, Stanislav Dusko Ehrlich, Martine Laville, Joël Doré, Julie-Anne Nazare
Published in: Gut Microbes, Issue 14, 2025, ISSN 1949-0976
Publisher: Landes Bioscience
DOI: 10.1080/19490976.2022.2044722

Associations Among Diet, Health, Lifestyle, and Gut Microbiota Composition in the General French Population: Protocol for the Le French Gut – Le Microbiote Français Study

Author(s): Chloe Connan, Sébastien Fromentin, Mourad Benallaoua, Anne-Sophie Alvarez, Nicolas Pons, Benoît Quinquis, Christian Morabito, Julie-Anne Nazare, Elise Borezée-Durant, null null, Florence Haimet, Stanislav Dusko Ehrlich, Karine Valeille, Alexandre Cavezza, Hervé Blottière, Patrick Veiga, Mathieu Almeida, Joël Doré, Robert Benamouzig
Published in: JMIR Research Protocols, Issue 14, 2025, Page(s) e64894, ISSN 1929-0748
Publisher: JMIR Publications Inc.
DOI: 10.2196/64894

Questioning the fetal microbiome and pitfalls of low-biomass microbial studies

Author(s): Kennedy, Katherine M.; de Goffau, Marcus C.; Perez-Munoz, Maria Elisa; Arrieta, Marie-Claire; Bäckhed, Fredrick; Bork, Peer; Braun, Thorsten; Bushman, Frederic D.; Dore, Joel; de Vos, Willem M.; Earl, Ashley M.; Eisen, Jonathan A.; Elovitz, Michal A.; Ganal-Vonarburg, Stephanie C.; Gänzle, Michael G.; Garrett, Wendy S.; Hall, Lindsay J.; Hornef, Mathias W.; Huttenhower, Curtis; Konnikova, Liza;
Published in: Nature, Issue 19, 2023, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-022-05546-8

Gut Microbiota Resilience: Definition, Link to Health and Strategies for Intervention

Author(s): Shaillay Kumar Dogra, Joel Doré, Sami Damak
Published in: Frontiers in Microbiology, Issue 11, 2020, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2020.572921

A mechanistic modelling approach of the host–microbiota interactions to investigate beneficial symbiotic resilience in the human gut

Author(s): Marie Haghebaert, Béatrice Laroche, Lorenzo Sala, Stanislas Mondot, Joël Doré
Published in: Journal of The Royal Society Interface, Issue 21, 2024, ISSN 1742-5662
Publisher: The Royal Society
DOI: 10.1098/rsif.2023.0756

Introduction to host microbiome symbiosis in health and disease

Author(s): Florent Malard, Joel Dore, Béatrice Gaugler, Mohamad Mohty
Published in: Mucosal Immunology, Issue 14/3, 2021, Page(s) 547-554, ISSN 1933-0219
Publisher: Nature Publishing Group
DOI: 10.1038/s41385-020-00365-4

Dynamic properties of the intestinal ecosystem call for combination therapies, targeting inflammation and microbiota, in ulcerative colitis

Author(s): Maarten van de Guchte, Stanislas Mondot, Joël Doré
Published in: Gastroenterology, 2021, ISSN 0016-5085
Publisher: W. B. Saunders Co., Ltd.
DOI: 10.1053/j.gastro.2021.08.057

Alternative stable states in the intestinal ecosystem: proof of concept in a rat model and a perspective of therapeutic implications

Author(s): Maarten Van de Guchte, Sebastian D. Burz, Julie Cadiou, Jiangbo Wu, Stanislas Mondot, Hervé M. Blottière, Joël Doré
Published in: Microbiome, Issue 8/1, 2020, ISSN 2049-2618
Publisher: BMS
DOI: 10.1186/s40168-020-00933-7

Alterations in gut microbiota characteristics along a type 2 diabetes risk gradient linked with family history

Author(s): Oscar Gitton-Quent, Mathilde Sola, Nicolas Maziers, Anne Hiol, Nicolas Dechamp, Emmanuelle Le Chatelier, Mathilde Touvier, Pilar Galan, Aymeric David, Christian Morabito, Alexandre Famechon, Benoit Quinquis, Mahendra Mariadassou, Patrick Veiga, Joel Dore, Magali Berland, Melanie Deschasaux-Tanguy
Published in: Gut Microbes Reports, Issue 2, 2025, ISSN 2993-3935
Publisher: Informa UK Limited
DOI: 10.1080/29933935.2025.2527766

Cognition and gut microbiota in schizophrenia spectrum and mood disorders: A systematic review

Author(s): S. Frileux, M. Boltri, J. Doré, M. Leboyer, P. Roux
Published in: Neuroscience & Biobehavioral Reviews, Issue 162, 2024, Page(s) 105722, ISSN 0149-7634
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.neubiorev.2024.105722

Gut microbiota diversity after autologous fecal microbiota transfer in acute myeloid leukemia patients

Author(s): Florent Malard, Anne Vekhoff, Simona Lapusan, Francoise Isnard, Evelyne D’incan-Corda, Jérôme Rey, Colombe Saillard, Xavier Thomas, Sophie Ducastelle-Lepretre, Etienne Paubelle, Marie-Virginie Larcher, Clément Rocher, Christian Recher, Suzanne Tavitian, Sarah Bertoli, Anne-Sophie Michallet, Lila Gilis, Pierre Peterlin, Patrice Chevallier, Stéphanie Nguyen, Emilie Plantamura, Lilia Boucinha,
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-23376-6