Next generation variety testing for improved cropping on European farmland

Información del proyecto

InnoVar

Identificador del acuerdo de subvención: 818144

DOI

10.3030/818144

Proyecto cerrado

Fecha de la firma de la CE 7 Mayo 2019

Fecha de inicio 1 Octubre 2019

Fecha de finalización 31 Diciembre 2024

Financiado con arreglo a

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Coste total

€ 8 044 690,00

Aportación de la UE

€ 7 999 540,00

Coordinado por

AGRIFOOD AND BIOSCIENCES INSTITUTE
United Kingdom

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Documents, reports (7)

Revised VCU protocols to include new methods (genomics, phenomics) and characters

Revised wheat VCU protocols will be summarised in a report. Included will be genomic markers and thresholds, phenomic markers, and enviro-genomic models, as appropriate, for the assessment of variety performance.

Emerging technologies review and roadmap [M51]

A high level review and roadmap will be developed for policy level use.

Classification of trial sites in years 1-3 - Final summary

Historic weather, soil and variety data in the InnoVar database will be used to describe types and degree of stresses across EU including Innovar trial sites - Update M50 - Final summary

A variety x HPLR category (growing scenario) matirx with values on the HPLR scale assigned to each variety for each category at the end of each trial year - M48

Update of 4.6

Emerging ‘omics' technology review and roadmap

High level review of areas of emerging 'omics' and breakthroughs can be incorporated in DUS and VCU testing for policy development and road maps.

Road map reports detailing how new methods could be applied to each selected crop type

This report will provide a road map on how new methods could be applied to the crop sub-set. Collaboration with INVITE is anticipated in the task relating to this report.

Assessment of the value of genetic profiles and GSVs for selection of reference varieties for DUS

This relates to task 3.3 and a protocol will be produced for the use of genetic profiles and GSV threshold values for augmenting DUS protocols (reference variety selection).

Other (4)

Final workshop/conference

Final project workshop/conference.

Final dissemination materials for end-users made available

Final dissemination materials will be made available to end-users.

InnoVar App and supporting interfaces

Developed App for growers to select varieties based on HPLR categories.

Farmer feedback on InnoVar recommendation system and App

This will be a summary of the feedback from grower groups on the InnoVar HPLR App.

Websites, patent fillings, videos etc. (2)

Researcher focussed website established - M30

LESP will develop a researcher-focused website that will allow researchers to query, modify and update variety data and information - Month 30.

Researcher focussed website update - M54

LESP will develop a researcher-focused website that will allow researchers to query, modify and update variety data and information - Month 54.

Publicaciones

Peer reviewed articles (28)

Analysis of the chromosomal clustering of Fusarium-responsive wheat genes uncovers new players in the defence against head blight disease

Autores: Alexandre Perochon, Harriet R. Benbow, Katarzyna Ślęczka-Brady, Keshav B. Malla, Fiona M. Doohan
Publicado en: Scientific Reports, Edición 11/1, 2021, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-021-86362-4

TrainSel: An R Package for Selection of Training Populations

Autores: Deniz Akdemir, Simon Rio, Julio Isidro y Sánchez
Publicado en: Frontiers in Genetics, Edición 12, 2021, ISSN 1664-8021
Editor: Frontiers Media
DOI: 10.3389/fgene.2021.655287

Genotype by Environment Interaction Analysis of Agronomic Spring Barley Traits in Iceland Using AMMI, Factorial Regression Model and Linear Mixed Model

Autores: Hrannar Smári Hilmarsson, Simon Rio, Julio Isidro y Sánchez
Publicado en: Agronomy, Edición 11/3, 2021, Página(s) 499, ISSN 2073-4395
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/agronomy11030499

Optimal age-specific vaccination control for COVID-19: An Irish case study

Autores: Eleni Zavrakli, Andrew Parnell, David Malone, Ken Duffy, Subhrakanti Dey
Publicado en: PLOS ONE, Edición 18, 2023, Página(s) e0290974, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0290974

Dissecting the genetic basis of resistance to Soil-borne cereal mosaic virus (SBCMV) in durum wheat by bi-parental mapping and GWAS

Autores: Martina Bruschi, Matteo Bozzoli, Claudio Ratti, Giuseppe Sciara, Ellen Goudemand, Pierre Devaux, Danara Ormanbekova, Cristian Forestan, Simona Corneti, Sandra Stefanelli, Sara Castelletti, Elena Fusari, Jad B Novi, Elisabetta Frascaroli, Silvio Salvi, Dragan Perovic, Agata Gadaleta, Concepcion Rubies-Autonell, Maria Corinna Sanguineti, Roberto Tuberosa, Marco Maccaferri
Publicado en: Theoretical and Applied Genetics, Edición 137, 2024, ISSN 0040-5752
Editor: Springer Verlag
DOI: 10.1007/s00122-024-04709-7

Genome‐wide analysis of salicylic acid and jasmonic acid signalling marker gene families in wheat

Autores: A. Heckmann, A. Perochon, F. M. Doohan
Publicado en: Plant Biology, Edición 26, 2024, Página(s) 691-704, ISSN 1435-8603
Editor: Georg Thieme Verlag
DOI: 10.1111/plb.13659

Modelling Excess Zeros in Count Data: A New Perspective on Modelling Approaches

Autores: John Haslett; Andrew C. Parnell; John Hinde; Rafael de Andrade Moral
Publicado en: International Statistical Review, Edición 2, 2021, ISSN 0306-7734
Editor: International Statistical Institute
DOI: 10.1111/insr.12479

Evaluation of the susceptibility of modern, wild, ancestral, and mutational wheat lines to Septoria tritici blotch disease

Autores: Sobia Ajaz, Harriet R. Benbow, Thalia Christodoulou, Cristobal Uauy, Fiona M. Doohan
Publicado en: Plant Pathology, Edición 70/5, 2021, Página(s) 1123-1137, ISSN 0032-0862
Editor: Blackwell Publishing Inc.
DOI: 10.1111/ppa.13369

Assessing the Opportunities and Risks of DUS and VCU Variety Testing for Sustainable Production through SWOT Analysis Results

Autores: Nóra Mendler-Drienyovszki, Katalin Magyar-Tábori, Roberto Mancinelli, Lisa Black, Hazel Brown, Mohamed Allam, Sripada M. Udupa, Mariam Atait, Elena Novarina, Tommaso Bardelli, Preben Klarskov Hansen, Paul Cottney, Anna Giulini
Publicado en: Agriculture, Edición 14, 2024, Página(s) 1817, ISSN 2077-0472
Editor: MDPI
DOI: 10.3390/agriculture14101817

Comprehensive analysis of pathogen-responsive wheat NAC transcription factors: new candidates for crop improvement

Autores: Monika Vranic, Alexandre Perochon, Harriet Benbow, Fiona M Doohan
Publicado en: G3 Genes|Genomes|Genetics, 2022, ISSN 2160-1836
Editor: Genetics Society of America
DOI: 10.1093/g3journal/jkac247

Vector time series modelling of turbidity in Dublin Bay

Autores: Amin Shoari Nejad, Gerard D. McCarthy, Brian Kelleher, Anthony Grey, Andrew Parnell
Publicado en: Journal of Applied Statistics, 2024, Página(s) 1-16, ISSN 0266-4763
Editor: Routledge
DOI: 10.1080/02664763.2024.2315470

Bayesian multi-species N-mixture models for unmarked animal communities

Autores: Niamh Mimnagh, Andrew Parnell, Estevão Prado, Rafael de Andrade Moral
Publicado en: Environmental and Ecological Statistics, Edición 29, 2022, Página(s) 755-778, ISSN 1352-8505
Editor: Kluwer Academic Publishers
DOI: 10.1007/s10651-022-00542-7

Genomic prediction and training set optimization in a structured Mediterranean oat population.

Autores: Simon Rio; Luis M. Gallego-Sánchez; Gracia Montilla-Bascón; Francisco José Canales; Julio Isidro y Sánchez; Elena Prats
Publicado en: Theoretical and Applied Genetics volume, Edición 134, 2021, ISSN 0040-5752
Editor: Springer Verlag
DOI: 10.1007/s00122-021-03916-w

Transcriptional Profiling Reveals the Wheat Defences against Fusarium Head Blight Disease Regulated by a NAC Transcription Factor

Autores: Monika Vranić; Alexandre Perochon; Fiona M. Doohan
Publicado en: Plants, Edición 12, 2023, ISSN 2223-7747
Editor: MDPI
DOI: 10.3390/plants12142708

Training Set Optimization for Sparse Phenotyping in Genomic Selection: A Conceptual Overview

Autores: Julio Isidro y Sánchez, Deniz Akdemir
Publicado en: Frontiers in Plant Science, Edición 12, 2021, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.715910

GP-BART: A novel Bayesian additive regression trees approach using Gaussian processes

Autores: Mateus Maia, Keefe Murphy, Andrew C. Parnell
Publicado en: Computational Statistics & Data Analysis, Edición 190, 2024, Página(s) 107858, ISSN 0167-9473
Editor: Elsevier BV
DOI: 10.1016/j.csda.2023.107858

Accounting for shared covariates in semi-parametric Bayesian additive regression trees

Autores: Batista Do Prado, Estevao; Parnell, Andrew; de Andrade Moral, Rafael; McJames, Nathan; O'Shea, Ann; Murphy, Keefe
Publicado en: Annals of Applied Statistics, Edición 1, 2024, ISSN 1932-6157
Editor: Institute of Mathematical Statistics
DOI: 10.48550/arxiv.2108.07636

Assessment of genomic prediction reliability and optimization of experimental designs in multi-environment trials

Autores: Simon Rio; Deniz Akdemir; Tiago Carvalho; Julio Isidro y Sánchez
Publicado en: Theoretical and Applied Genetics, Edición 2, 2022, ISSN 0040-5752
Editor: Springer Verlag
DOI: 10.1007/s00122-021-03972-2

Revisiting superiority and stability metrics of cultivar performances using genomic data: derivations of new estimators

Autores: Humberto Fanelli Carvalho, Simon Rio, Julian García-Abadillo, Julio Isidro y Sánchez
Publicado en: Plant Methods, Edición 20, 2024, ISSN 1746-4811
Editor: BioMed Central
DOI: 10.1186/s13007-024-01207-1

Visualizing Variable Importance and Variable Interaction Effects in Machine Learning Models

Autores: Alan Inglis; Andrew C. Parnell; Catherine B. Hurley
Publicado en: Journal of Computational and Graphical Statistics, Edición 2, 2021, ISSN 1061-8600
Editor: American Statistical Association
DOI: 10.48550/arxiv.2108.04310

Bayesian additive regression trees for genotype by environment interaction models

Autores: Danilo A. Sarti, Estevão B. Prado, Alan N. Inglis, Antônia A. L. dos Santos, Catherine B. Hurley, Rafael A. Moral, Andrew C. Parnell
Publicado en: The Annals of Applied Statistics, Edición 17, 2023, ISSN 1932-6157
Editor: Institute of Mathematical Statistics
DOI: 10.1214/22-aoas1698

Changes in the Rhizosphere Biome Depending on the Variety of Wheat, Timing of Its Growing Season, and Agrochemical Components in the Soils of Italy

Autores: Tommaso Bardelli, Flavio Fornasier, Elena Novarina, Antonella Donniacuo, Elio Romano, Pier Giacomo Bianchi, Anna Pia Maria Giulini
Publicado en: Agronomy, Edición 14, 2024, Página(s) 832, ISSN 2073-4395
Editor: MDPI
DOI: 10.3390/agronomy14040832

Pollen Geochronology from the Atlantic Coast of the United States during the Last 500 Years

Autores: Margaret Christie, Christopher Bernhardt, Andrew Parnell, Timothy Shaw, Nicole Khan, D. Corbett, Ane García-Artola, Jennifer Clear, Jennifer Walker, Jeffrey Donnelly, Tobias Hasse, Benjamin Horton
Publicado en: Water, Edición 13/3, 2021, Página(s) 362, ISSN 2073-4441
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/w13030362

A Bayesian time series model for reconstructing hydroclimate from multiple proxies

Autores: Niamh Cahill, Jacky Croke, Micheline Campbell, Kate Hughes, John Vitkovsky, Jack Eaton Kilgallen, Andrew Parnell
Publicado en: Environmetrics, Edición 34, 2023, ISSN 1180-4009
Editor: John Wiley & Sons Inc.
DOI: 10.1002/env.2786

Dissecting the complex genetic basis of pre- and post-harvest traits in <i>Vitis vinifera L</i>. using genome-wide association studies

Autores: Julian García-Abadillo, Paola Barba, Tiago Carvalho, Viviana Sosa-Zuñiga, Roberto Lozano, Humberto Fanelli Carvalho, Miguel Garcia-Rojas, Erika Salazar, Julio Isidro y Sánchez
Publicado en: Horticulture Research, Edición 11, 2024, ISSN 2052-7276
Editor: Oxford University Press
DOI: 10.1093/hr/uhad283

Bayesian additive regression trees with model trees

Autores: Estevão B. Prado, Rafael A. Moral, Andrew C. Parnell
Publicado en: Statistics and Computing, Edición 31, 2024, ISSN 0960-3174
Editor: Kluwer Academic Publishers
DOI: 10.1007/s11222-021-09997-3

Towards a Digital Twin of the Earth System: Geo-Soft-CoRe, a Geoscientific Software & Code Repository

Autores: Irene DeFelipe; Juan Alcalde; Eldar Baykiev; Isabel Bernal; Kittiphon Boonma; Ramon Carbonell; Stephanie Flude; Arnau Folch; Javier Fullea; Daniel García-Castellanos; Adelina Geyer; Santiago Giralt; Armand Hernández; Ivone Jiménez-Munt; Ajay Kumar; Maria-Gema Llorens; Joan Martí; Cecilia Molina; Andrés Olivar-Castaño; Andrew Parnell; Martin Schimmel; Montserrat Torné; Sergi Ventosa
Publicado en: Frontiers in Earth Science, Edición 10, 2022, ISSN 2296-6463
Editor: Frontiers Media S.A.
DOI: 10.3389/feart.2022.828005

Visualisations for Bayesian Additive Regression Trees

Autores: Alan Inglis, Andrew Parnell, Catherine Hurley
Publicado en: Journal of Data Science, Statistics, and Visualisation, Edición 4, 2024, ISSN 2773-0689
Editor: IASC
DOI: 10.52933/jdssv.v4i1.79

Other (5)

AFBI Science Impacts 2021: InnoVar: Next generation variety testing for improved cropping on European farmland

Autores: Gareth Burns, Lisa Black
Publicado en: AFBI Science Impacts, 2021
Editor: AFBI

How InterTradeIreland helped InnoVar secure H2020 funding

Autores: Lisa Black, Fiona Doohan, Elaine Groom, IntertradeIreland
Publicado en: 2020
Editor: Intertrade Ireland

InnoVar Kicks Off!

Autores: Lisa Black, Hazel Brown, Gerry Hoppe
Publicado en: 2019
Editor: AFBI

Tystoftes deltagelse i EU projektet InnoVar

Autores: Preben Klarskov Hansen
Publicado en: 2020
Editor: Tystoftefonden

Fænotypiske forskelle mellem sorter EU projektet InnoVar

Autores: Preben Klarskov Hansen
Publicado en: 2020
Editor: Tystofte