Three-dimensional holo’omic landscapes to unveil host-microbiota interactions shaping animal production

Project Information

3D-omics

Grant agreement ID: 101000309

DOI

10.3030/101000309

Project closed

EC signature date 10 May 2021

Start date 1 September 2021

End date 31 December 2025

Funded under

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Total cost

€ 10 073 540,01

EU contribution

€ 9 994 415,00

Coordinated by

KOBENHAVNS UNIVERSITET
Denmark

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (7)

Manuscript: modulate microbiota based on 3D'omics

Manuscript: modulate microbiota based on 3D’omics

Manuscript: comparison of 3D'omics and multi-omics

Manuscript: comparison of 3D’omics and multi-omics

International Collaboration Reinforcing report
Outreach and public engagement activity report
Economic and Life Cycle Assessment of 3D'omics

Economic and Life Cycle Assessment of 3D’omics

3D'omics technology blueprint

3D’omics technology blueprint

Manuscript: how to implement 3D'omics data in breeding and nutrition

Manuscript: how to implement 3D’omics data in breeding and nutrition

Other (5)

3D'omics outreach videos

3Domics outreach videos

www.3domics.eu website

www3domicseu website

3D'omics data and metadata standards

3D’omics data and metadata standards

3D'omics visualisation platform

3D’omics visualisation platform

3D'omics outreach video 2

Publications

Peer reviewed articles (4)

Predicting microbial interactions with approaches based on flux balance analysis: an evaluation

Author(s): Clémence Joseph, Haris Zafeiropoulos, Kristel Bernaerts, Karoline Faust
Published in: BMC Bioinformatics, Issue 25, 2024, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-024-05651-7

microbetag: simplifying microbial network interpretation through annotation, enrichment tests, and metabolic complementarity analysis

Author(s): Haris Zafeiropoulos, Ermis Ioannis Michail Delopoulos, Andi Erega, Aline Schneider, Annelies Geirnaert, John Morris, Karoline Faust
Published in: Genome Biology, Issue 26, 2025, Page(s) 1-34, ISSN 1474-760X
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/s13059-025-03769-2

Integrating host and microbiome biology using holo-omics

Author(s): Carl M Kobel, Jenny Merkesvik, Idun Maria Tokvam Burgos, Wanxin Lai, Ove Øyås, Phillip B Pope, Torgeir R Hvidsten, Velma T E Aho
Published in: Molecular Omics, Issue 20, 2026, Page(s) 438-452, ISSN 2515-4184
Publisher: Oxford University Press (OUP)
DOI: 10.1039/d4mo00017j

Differential effects of synbiotic delivery route (feed, water, combined) in broilers challenged with Salmonella Infantis

Author(s): Victoria Drauch, Mahdi Ghanbari, Nicole Reisinger, Michaela Mohnl, Claudia Hess, Michael Hess
Published in: Poultry Science, Issue 104, 2025, Page(s) 104890, ISSN 0032-5791
Publisher: Poultry Science Association Inc.
DOI: 10.1016/j.psj.2025.104890