Knowledge based design of complex synthetic microbial communities for plant protection

Project Information

DeCoCt

Grant agreement ID: 820124

DOI

10.3030/820124

Project closed

EC signature date 4 February 2019

Start date 1 March 2019

End date 28 February 2025

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 925 500,00

EU contribution

€ 1 925 500,00

Coordinated by

EBERHARD KARLS UNIVERSITAET TUEBINGEN
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Open Research Data Pilot (1)

Data Management Plan

All relevant sequencing data will be deposited at the ENA European Nucleotide Archive EMBLEBI and will be publicly available upon paper publication or after 60 months latest Assembled genomes and genome data including annotations will be deposited within the EuPathDBAll customized code for data analysis will be regularly deposited and updated at githubAll data analyses and interpretation will be made available through publication in open access journals as far as possible and permitted by the type of analyses

Publications

Peer reviewed articles (7)

Distinct Phyllosphere Microbiome of Wild Tomato Species in Central Peru Upon Dysbiosis

Author(s): Paul Runge, Freddy Ventura, Eric Kemen, Remco Stam
Published in: Microbial Ecology, 2021, ISSN 0095-3628
Publisher: Springer Verlag
DOI: 10.21203/rs.3.rs-648608/v1

Microbial communities living inside plant leaves or on the leaf surface are differently shaped by environmental cues

Author(s): Maryam Mahmoudi, Juliana Almario, Katrina Lutap, Kay Nieselt, Eric Kemen
Published in: ISME Communications, Issue 4, 2024, ISSN 2730-6151
Publisher: Oxford University Press (OUP)
DOI: 10.1093/ismeco/ycae103

Predicting Lifestyle from Positive Selection Data and Genome Properties in Oomycetes

Author(s): Daniel Gómez-Pérez, Eric Kemen
Published in: Pathogens, 2021, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens10070807

Strong pairwise interactions do not drive interactions in a plant leaf associated microbial community

Author(s): Franziska Höhn, Vasvi Chaudhry, Caner Bagci, Maryam Mahmoudi, Elke Klenk3, Lara Berg, Paolo Stincone, Chambers C Hughes, Daniel Petras, Heike Brötz-Oesterhelt, Eric Kemen, Nadine Ziemert
Published in: ISME Communications, 2024, ISSN 2730-6151
Publisher: Oxford University Press (OUP)
DOI: 10.1093/ismeco/ycae117

The Leaf Microbiome of Arabidopsis Displays Reproducible Dynamics and Patterns throughout the Growing Season

Author(s): Juliana Almario, Maryam Mahmoudi, Samuel Kroll, Mathew Agler, Aleksandra Placzek, Alfredo Mari, Eric Kemen
Published in: mBio, 2022, ISSN 2161-2129
Publisher: American Society for Microbiology
DOI: 10.1128/mbio.02825-21

Proteins released into the plant apoplast by the obligate parasitic protist <i>Albugo</i> selectively repress phyllosphere‐associated bacteria

Author(s): Daniel Gómez‐Pérez; Monja Schmid; Vasvi Chaudhry; Yiheng Hu; Ana Velic; Boris Maček; Jonas Ruhe; Ariane Kemen; Eric Kemen
Published in: New Phytologist, Issue Volume 239, Issue 6, 2023, Page(s) 2320-2334, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.18995

Topic: Shaping the leaf microbiota: plant-microbe-microbe interactions

Author(s): Vasvi Chaudhry, Paul Runge, Priyamedha Sengupta, Gunther Doehlemann, Jane E Parker, Eric Kemen
Published in: Journal of Experimental Botany, 2020, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/eraa417

Other (2)

Life on leaves : uncovering temporal dynamics in Arabidopsis’ leaf microbiota

Author(s): Juliana Almario, Maryam Mahmudi, Samuel Kroll, Mathew Agler, Aleksandra Placzek, Alfredo Mari, Eric Kemen
Published in: bioRxiv, 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.07.06.450897

Machine Learning Reveals Biocontrol Agents Shaping Disease Protection in Natural Arabidopsis Populations and Synthetic Communities

Author(s): Eric Kemen, Maryam Mahmoudi, Yiheng Hu, Juliana Almario, Paolo Stincone, Lynn-Marie Tenzer, Vasvi Chaudhry, Kay Nieselt
Published in: Research Square, Issue Version 1 posted 13 Mar, 2025, 2025, Page(s) 1-35, ISSN 2693-5015
Publisher: Springer Science and Business Media LLC
DOI: 10.21203/rs.3.rs-6130404/v1

Non-peer reviewed articles (1)

Machine Learning Reveals Biocontrol Agents Shaping Disease Protection in Natural Arabidopsis Populations and Synthetic Communities

Author(s): Eric Kemen, Maryam Mahmoudi, Yiheng Hu, Juliana Almario, Paolo Stincone, Lynn-Marie Tenzer, Vasvi Chaudhry, Kay Nieselt
Published in: Research Square, 2025, ISSN 2693-5015
Publisher: Springer Nature
DOI: 10.21203/rs.3.rs-6130404/v1