Career Accelerator for Research Infrastructure Scientists

Informacje na temat projektu

ARISE

Identyfikator umowy o grant: 945405

DOI

10.3030/945405

Data podpisania przez KE 6 Maja 2020

Data rozpoczęcia 1 Maja 2021

Data zakończenia 30 Kwietnia 2027

Finansowanie w ramach

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Koszt całkowity

€ 13 682 160,00

Wkład UE

€ 6 841 080,00

Koordynowany przez

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Germany

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Documents, reports (4)

First call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

First call - Inform the Project Officer about the publication of the call on the Euraxess website, by sending the link to the Euraxess website and a screen shot of the related call announcement

Fourth call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Fourth call - Inform the Project Officer about the publication of the call on the Euraxess website, by sending the link to the Euraxess website and a screen shot of the related call announcement

Third call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Third call Inform the Project Officer about the publication of the call on the Euraxess website by sending the link to the Euraxess website and a screen shot of the related call announcement

Second call - Informing the Project Officer by sending the link to the Euraxess website where the Call has been published

Second call Inform the Project Officer about the publication of the call on the Euraxess website by sending the link to the Euraxess website and a screen shot of the related call announcement

Publikacje

Peer reviewed articles (23)

Assessment of Data-Independent Acquisition Mass Spectrometry (DIA-MS) for the Identification of Single Amino Acid Variants

Autorzy: Ivo Fierro-Monti, Klemens Fröhlich, Christian Schori, Alexander Schmidt
Opublikowane w: Proteomes, Numer 12, 2024, Strona(/y) 33, ISSN 2227-7382
Wydawca: MDPI AG
DOI: 10.3390/proteomes12040033

MosaiCatcher v2: a single-cell structural variations detection and analysis reference framework based on Strand-seq

Autorzy: Thomas Weber, Marco Raffaele Cosenza, Jan Korbel
Opublikowane w: Bioinformatics, Numer 39, 2023, ISSN 1367-4811
Wydawca: Oxford University Press (OUP)
DOI: 10.1093/bioinformatics/btad633

The crystal structure of Nictaba reveals its carbohydrate-binding properties and a new lectin dimerization mode

Autorzy: Yehudi Bloch, Vinicius J S Osterne, Savvas N Savvides, Els J M Van Damme
Opublikowane w: Glycobiology, Numer 34, 2024, ISSN 1460-2423
Wydawca: Oxford University Press (OUP)
DOI: 10.1093/glycob/cwae087

Biophysical screening pipeline for Cryo-EM grid preparation of membrane proteins

Autorzy: Niebling S, Veith K, Vollmer B, Lizarrondo J, Burastero O, Schiller J, Struve García A, Lewe P, Seuring C, Witt S, García-Alai M.
Opublikowane w: Frontiers in Molecular Biosciences, 2022, ISSN 2296-889X
Wydawca: Frontiers Media S.A.
DOI: 10.3389/fmolb.2022.882288

Three-photon microscopy: an emerging technique for deep intravital brain imaging

Autorzy: Robert Prevedel, Júlia Ferrer Ortas, Jason N. D. Kerr, Jack Waters, Michael O. Breckwoldt, Benjamin Deneen, Michelle Monje, Stella J. Soyka, Varun Venkataramani
Opublikowane w: Nature Reviews Neuroscience, 2025, ISSN 1471-003X
Wydawca: Nature Publishing Group
DOI: 10.1038/s41583-025-00937-y

ChiraKit: an online tool for the analysis of circular dichroism spectroscopy data

Autorzy: Osvaldo Burastero, Nykola C Jones, Lucas A Defelipe, Uroš Zavrtanik, San Hadži, Søren Vrønning Hoffmann, Maria M Garcia-Alai
Opublikowane w: Nucleic Acids Research, 2025, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkaf350

Quantifying conformational changes in the TCR:pMHC-I binding interface

Autorzy: Benjamin McMaster, Christopher J. Thorpe, Jamie Rossjohn, Charlotte M. Deane, Hashem Koohy
Opublikowane w: Frontiers in Immunology, Numer 15, 2024, ISSN 1664-3224
Wydawca: Frontiers Media SA
DOI: 10.3389/fimmu.2024.1491656

RBPs: an RNA editor’s choice

Autorzy: Ivo Fierro-Monti
Opublikowane w: Frontiers in Molecular Biosciences, Numer 11, 2024, ISSN 2296-889X
Wydawca: Frontiers Media SA
DOI: 10.3389/fmolb.2024.1454241

Raynals, an online tool for the analysis of dynamic light scattering

Autorzy: Osvaldo Burastero, George Draper-Barr, Bertrand Raynal Maelenn Chevreuil, Patrick Englandc and Maria Garcia Alai
Opublikowane w: Acta Crystallographica Section D: Structural Biology, 2023, ISSN 2059-7983
Wydawca: IUCr/Wiley
DOI: 10.1107/s2059798323004862

Pervasive sublethal effects of agrochemicals on insects at environmentally relevant concentrations

Autorzy: Lautaro Gandara, Richard Jacoby, François Laurent, Matteo Spatuzzi, Nikolaos Vlachopoulos, Noa O. Borst, Gülina Ekmen, Clement M. Potel, Martin Garrido-Rodriguez, Antonia L. Böhmert, Natalia Misunou, Bartosz J. Bartmanski, Xueying C. Li, Dominik Kutra, Jean-Karim Hériché, Christian Tischer, Maria Zimmermann-Kogadeeva, Victoria A. Ingham, Mikhail M. Savitski, Jean-Baptiste Masson, Michael Zimm
Opublikowane w: Science, Numer 386, 2024, Strona(/y) 446-453, ISSN 0036-8075
Wydawca: American Association for the Advancement of Science
DOI: 10.1126/science.ado0251

Identifying individuals using proteomics: are we there yet?

Autorzy: Ivo Fierro-Monti, James C Wright, Jyoti S Choudhary, Juan Antonio Vizcaíno
Opublikowane w: Frontiers in molecular biosciences, 2022, ISSN 2296-889X
Wydawca: Frontiers
DOI: 10.3389/fmolb.2022.1062031

Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

Autorzy: Melanie Vollmar, Santosh Tirunagari, Deborah Harrus, David Armstrong, Romana Gáborová, Deepti Gupta, Marcelo Querino Lima Afonso, Genevieve Evans, Sameer Velankar
Opublikowane w: Scientific Data, Numer 11, 2024, ISSN 2052-4463
Wydawca: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03841-9

Europe PMC in 2023.

Autorzy: Summer Rosonovski , Maria Levchenko , Rajat Bhatnagar, Umamageswari Chandrasekaran, Lynne Faulk, Islam Hassan, Matt Jeffryes, Syed Irtaza Mubashar, Maaly Nassar , Madhumiethaa Jayaprabha Palanisamy, Michael Parkin, Jagadeeswararao Poluru, Frances Rogers, Shyamasree Saha, Mohamed Selim, Zunaira Shafique, Michele Ide-Smith, David Stephenson, Santosh Tirunagari, Aravind Venkatesan, Lijun Xing and Mel
Opublikowane w: Nucleic Acids Research, 2024, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkad1085

Mesoscopic axially swept oblique plane microscope for the imaging of freely moving organisms with near-isotropic resolution

Autorzy: Samuel Davis, Jon-Richard Sommernes, Sebastian Hambura, Levin Riedel, Alejandro Gil, Aissam Ikmi, Florian Ströhl, Robert Prevedel
Opublikowane w: Biomedical Optics Express, Numer 15, 2024, Strona(/y) 6715, ISSN 2156-7085
Wydawca: The Optical Society
DOI: 10.1364/boe.537262

High-resolution X-ray phase-contrast tomography of human placenta with different wavefront markers

Autorzy: Sara Savatović, Davis Laundon, Fabio De Marco, Mirko Riedel, Jörg U. Hammel, Madleen Busse, Murielle Salomé, Lorella Pascolo, Irene Zanette, Rohan M. Lewis, Julia Herzen, Pierre Thibault
Opublikowane w: Scientific Reports, Numer 15, 2025, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-025-85105-z

Cosolvent Sites-Based Discovery of<i>Mycobacterium Tuberculosis</i>Protein Kinase G Inhibitors

Autorzy: Osvaldo Burastero, Lucas A. Defelipe, Gabriel Gola, Nancy L. Tateosian, Elias D. Lopez, Camila Belen Martinena, Juan Pablo Arcon, Martín Dodes Traian, Diana E. Wetzler, Isabel Bento, Xavier Barril, Javier Ramirez, Marcelo A. Marti, Maria M. Garcia-Alai, Adrián G. Turjanski
Opublikowane w: Journal of Medicinal Chemistry, Numer 65, 2024, Strona(/y) 9691-9705, ISSN 0022-2623
Wydawca: American Chemical Society
DOI: 10.1021/acs.jmedchem.1c02012

Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast

Autorzy: Lucas A. Defelipe, Katharina Veith, Osvaldo Burastero, Tatiana Kupriianova, Isabel Bento, Michal Skruzny, Knut Kölbel, Charlotte Uetrecht, Roland Thuenauer, Maria M. García-Alai
Opublikowane w: Nature Communications, Numer 15, 2024, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-024-54037-z

LitSumm: large language models for literature summarization of noncoding RNAs

Autorzy: Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Sam Griffiths-Jones, Anton I Petrov, Alex Bateman, Blake Sweeney
Opublikowane w: Database, Numer 2025, 2025, ISSN 1758-0463
Wydawca: Oxford University Press
DOI: 10.1093/database/baaf006

<i>In situ</i> serial crystallography facilitates 96-well plate structural analysis at low symmetry

Autorzy: Nicolas Foos, Jean-Baptise Florial, Mathias Eymery, Jeremy Sinoir, Franck Felisaz, Marcus Oscarsson, Antonia Beteva, Matthew W. Bowler, Didier Nurizzo, Gergely Papp, Montserrat Soler-Lopez, Max Nanao, Shibom Basu, Andrew A. McCarthy
Opublikowane w: IUCrJ, Numer 11, 2024, Strona(/y) 780-791, ISSN 2052-2525
Wydawca: International Union of Crystallography (IUCr)
DOI: 10.1107/s2052252524005785

Visualizing metagenomic and metatranscriptomic data: A comprehensive review

Autorzy: Eleni Aplakidou, Nikolaos Vergoulidis, Maria Chasapi, Nefeli K. Venetsianou, Maria Kokoli, Eleni Panagiotopoulou, Ioannis Iliopoulos, Evangelos Karatzas, Evangelos Pafilis, Ilias Georgakopoulos-Soares, Nikos C. Kyrpides, Georgios A. Pavlopoulos, Fotis A. Baltoumas
Opublikowane w: Computational and Structural Biotechnology Journal, Numer 23, 2025, Strona(/y) 2011-2033, ISSN 2001-0370
Wydawca: Elsevier BV
DOI: 10.1016/j.csbj.2024.04.060

Robust dark-field signal extraction for modulation-based x-ray tensor tomography

Autorzy: Ginevra Lautizi, Vittorio Di Trapani, Alain Studer, Marie-Christine Zdora, Fabio De Marco, Jisoo Kim, Federica Marone, Marco Stampanoni, Pierre Thibault
Opublikowane w: Applied Physics Letters, Numer 125, 2025, ISSN 0003-6951
Wydawca: American Institute of Physics
DOI: 10.1063/5.0244120

Can AlphaFold’s breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity?

Autorzy: Benjamin McMaster, Christopher Thorpe, Graham Ogg, Charlotte M. Deane & Hashem Koohy
Opublikowane w: Nature Methods, 2024, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/s41592-024-02240-7

Image scanning microscopy reconstruction by autocorrelation inversion

Autorzy: Daniele Ancora, Alessandro Zunino, Giuseppe Vicidomini, Alvaro H Crevenna
Opublikowane w: Journal of Physics: Photonics, Numer 6, 2024, Strona(/y) 045003, ISSN 2515-7647
Wydawca: IOP Publishing
DOI: 10.1088/2515-7647/ad68dd

Other (9)

Conference (poster and talk): eSPC, an online data-analysis platform for molecular biophysics

Autorzy: Osvaldo Burastero, Stephan Niebling, Angelica Struve, Maria Garcia Alai
Opublikowane w: 1st MOSBRI Scientific Conference, 2022
Wydawca: MOlecular-Scale Biophysics Research Infrastructure (MOSBRI)

Elucidating the mechanisms of action and evolutionary history of phage anti-defence proteins

Autorzy: Khalimat Murtazalieva, Evangelos Karatzas, Federico Corona, Jiawei Wang, Athanasios Typas, Robert D. Finn
Opublikowane w: 2025
Wydawca: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.06.06.658234

metagRoot: A comprehensive database of protein families associated with plant root microbiomes

Autorzy: Maria N. Chasapi, Iro N. Chasapi, Eleni Aplakidou, Fotis A. Baltoumas, Evangelos Karatzas, Ioannis Iliopoulos, Dimitrios J. Stravopodis, Ioannis Z. Emiris, Aydin Buluç, Ilias Georgakopoulos-Soares, Nikos C. Kyrpides, Georgios A. Pavlopoulos
Opublikowane w: 2025
Wydawca: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.05.22.653656

Conference (talk):Shining a Light on Dynamic Data: From generation to interpretation

Autorzy: Osvaldo Burastero
Opublikowane w: 2nd MOSBRI Scientific Conference, 2023
Wydawca: MOlecular-Scale Biophysics Research Infrastructure (MOSBRI)

Conference poster:eSPC, an online data-analysis platform for molecular biophysics

Autorzy: Osvaldo Burastero, Angelica Struve, Stephan Niebling, Maria Garcia Alai
Opublikowane w: Instruct Biennial Structural Biology Conference, 2022
Wydawca: Instruct-ERIC

Early regional lymph node activation drives influenza vaccine responses in an ancestrally diverse cohort

Autorzy: Jacqueline HY Siu, Sofia Coelho, Aime Palomeras, Sandra Belij-Rammerstorfer, Chloe H Lee, Tamara Strobel, Christopher Thorpe, Charandeep Kaur, Tom Cole, Nico Remmert, Jamie Fowler, Sam Pledger, Kyla B Dooley, Daniel Opoka, Tamas Szommer, Samantha Vanderslott, Pontiano Kaleebu, Anita Milicic, Donald B Palmer, Teresa Lambe, Brian D Marsden, Hashem Koohey, Mark Coles, Calliope A Dendrou, Katrina M Po
Opublikowane w: 2024
Wydawca: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.10.28.620725

Biocuration Toolbox

Autorzy: Matt Jeffryes
Opublikowane w: 2023
Wydawca: Matt Jeffreys

Image Scanning Microscopy Reconstruction by Autocorrelation Inversion

Autorzy: Daniele Ancora, Alessandro Zunino, Giuseppe Vicidomini, Alvaro H. Crevenna
Opublikowane w: 2024
Wydawca: ArXiv.org
DOI: 10.48550/arxiv.2404.08946

High-quality peptide evidence for annotating non-canonical open reading frames as human proteins

Autorzy: Eric W Deutsch, Leron W Kok, Jonathan M Mudge, Jorge Ruiz-Orera, Ivo Fierro-Monti, Zhi Sun, Jennifer G Abelin, M Mar Alba, Julie L Aspden, Ariel A Bazzini, Elspeth A Bruford, Marie A Brunet, Lorenzo Calviello, Steven A Carr, Anne-Ruxandra Carvunis, Sonia Chothani, Jim Clauwaert, Kellie Dean, Pouya Faridi, Adam Frankish, Norbert Hubner, Nicholas T Ingolia, Michele Magrane, Maria Jesus Martin, Thoma
Opublikowane w: 2025
Wydawca: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.09.09.612016

Book chapters (2)

Biophysical Characterization of Membrane Proteins

Autorzy: Niebling S, Burastero O, García-Alai M.
Opublikowane w: Methods in Molecular Biology book series (MIMB,volume 2652), 2023, ISSN 978-1-0716-3146-1978-1-0716-3147-8
Wydawca: Humana, New York, NY (Springer)
DOI: 10.1007/978-1-0716-3147-8_12

“Recombineering: A Modern Approach to Genetic Engineering

Autorzy: Sawitzke, J.A., Barenghi, A., Thomason, L., Costantino, N. and Court, D.
Opublikowane w: Brenner’s Encyclopaedia of Genetics 3rd Edition, 2023, ISBN 9780123749840
Wydawca: Elsevier