Numerical modeling of cardiac electrophysiology at the cellular scale

Informacje na temat projektu

MICROCARD

Identyfikator umowy o grant: 955495

DOI

10.3030/955495

Projekt został zamknięty

Data podpisania przez KE 18 Grudnia 2020

Data rozpoczęcia 1 Kwietnia 2021

Data zakończenia 30 Września 2024

Finansowanie w ramach

• INDUSTRIAL LEADERSHIP - Leadership in enabling and industrial technologies - Information and Communication Technologies (ICT)

Koszt całkowity

€ 5 858 546,25

Wkład UE

€ 2 777 053,32

Koordynowany przez

UNIVERSITE DE BORDEAUX
France

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Documents, reports (9)

Report on task-based parallelization

Publication of a report on task-based parallelization.

Report on MPI communication optimization

Publication of a report on optimization of MPI communication in the code.

Report on the sustainable roadmap for MICROCARD platform and software

Publication of a report on the sustainable roadmap for the MICROCARD platform and software.

A Software Management Plan for the HPC simulation platform μ CARP

Creation of a Software Management Plan for the HPC simulation platform CARP

Results of the surveys conducted in M18 and M36 on ease of use of the cloud-based web platform

Publication of a report on the results of the surveys conducted in M18 and M36 on ease of use of the cloud-based web platform

Linear solver development and performance assessment report

Publication of a report on the development of linear solvers and an assessment of their performance

Report on High-Performance Data Output

Publication of a report on High-Performance Data Output

Report on automatic checkpoint placement strategy

Publication of a report on automatic checkpoint placement strategy in the code

Report on the implemented DevOps toolchain as a best-practice example

Demonstrators, pilots, prototypes (2)

Linear solver application integration proof

Demonstration of the application of the newly integrated linear solver(s).

Resilient parallelization support

Prototype of the code with task-based parallellization that is resilient to hardware failures.

Open Research Data Pilot (1)

Online publication of the use cases

Posts on the use cases intended for a large audience, on the project website.

Publikacje

Peer reviewed articles (17)

A comparison of Algebraic Multigrid Bidomain solvers on hybrid CPU–GPU architectures

Autorzy: Edoardo Centofanti, Simone Scacchi
Opublikowane w: Computer Methods in Applied Mechanics and Engineering, Numer 423, 2024, Strona(/y) 116875, ISSN 0045-7825
Wydawca: Elsevier BV
DOI: 10.1016/j.cma.2024.116875

Robust parallel nonlinear solvers for implicit time discretizations of the Bidomain equations with staggered ionic models

Autorzy: Nicolás A. Barnafi, Ngoc Mai Monica Huynh, Luca F. Pavarino, Simone Scacchi
Opublikowane w: Computers & Mathematics with Applications, Numer 167, 2024, Strona(/y) 134-149, ISSN 0898-1221
Wydawca: Pergamon Press Ltd.
DOI: 10.1016/j.camwa.2024.04.014

Explicit stabilized multirate methods for the monodomain model in cardiac electrophysiology

Autorzy: Giacomo Rosilho de Souza, Marcus Grote, Simone Pezzuto, Rolf Krause
Opublikowane w: ESAIM: Mathematical Modelling and Numerical Analysis, 2024, ISSN 2822-7840
Wydawca: edpsciences
DOI: 10.1051/m2an/2024030

A Review of Healthy and Fibrotic Myocardium Microstructure Modeling and Corresponding Intracardiac Electrograms

Autorzy: Sánchez, J.; Loewe, A.
Opublikowane w: Frontiers in Physiology, 2022, ISSN 1664-042X
Wydawca: Frontiers Research Foundation
DOI: 10.3389/fphys.2022.908069

Scalable and Robust Dual-Primal Newton–Krylov Deluxe Solvers for Cardiac Electrophysiology with Biophysical Ionic Models

Autorzy: Ngoc Mai Monica Huynh; Luca F. Pavarino; Simone Scacchi
Opublikowane w: Vietnam Journal of Mathematics, Numer 50, 2022, ISSN 2305-221X
Wydawca: Springer Science + Business Media
DOI: 10.1007/s10013-022-00576-1

Boundary integral formulation of the cell-by-cell model of cardiac electrophysiology

Autorzy: Giacomo Rosilho de Souza, Rolf Krause, Simone Pezzuto
Opublikowane w: Engineering Analysis with Boundary Elements, Numer 158, 2023, Strona(/y) 239-251, ISSN 0955-7997
Wydawca: Pergamon Press Ltd.
DOI: 10.1016/j.enganabound.2023.10.021

Characterization of the pace-and-drive capacity of the human sinoatrial node: A 3D in silico study

Autorzy: Antoine Amsaleg; Jorge Sánchez; Ralf Mikut; Axel Loewe
Opublikowane w: Biophysical Journal, Numer 121, 2022, Strona(/y) 4247–4259, ISSN 0006-3495
Wydawca: Biophysical Society
DOI: 10.1016/j.bpj.2022.10.020

A Survey of General-purpose Polyhedral Compilers

Autorzy: Arun Thangamani, Vincent Loechner, Stéphane Genaud
Opublikowane w: ACM Transactions on Architecture and Code Optimization, 2024, ISSN 1544-3566
Wydawca: Association for Computing Machinary, Inc.
DOI: 10.1145/3674735

Epicardial Dispersion of Repolarization Promotes the Onset of Reentry in Brugada Syndrome: A Numerical Simulation Study

Autorzy: Simone Scacchi, Piero Colli Franzone, Luca F. Pavarino, Vincenzo Gionti, Cesare Storti
Opublikowane w: Bulletin of Mathematical Biology, Numer 85, 2023, ISSN 0092-8240
Wydawca: Academic Press
DOI: 10.1007/s11538-023-01124-9

The openCARP CDEConcept for and implementation of a sustainable collaborativedevelopment environment for research software

Autorzy: Felix Bach, Jochen Klar, Axel Loewe, Jorge Sánchez, Gunnar Seemann, Yung-Lin Huang, Robert Ulrich
Opublikowane w: Bausteine Forschungsdatenmanagement, Numer Nr.1, 2022, ISSN 2626-7489
Wydawca: Marburg: Philipps-Universität
DOI: 10.17192/bfdm.2022.1.8368

À quoi servent les ordinateurs les plus puissants au monde ? Un exemple en cardiologie.

Autorzy: Emmanuelle Saillard; Mark Potse
Opublikowane w: The Conversation, 2022, ISSN 2431-2134
Wydawca: The Conversation Media Group

The role of pulse timing in cardiac defibrillation

Autorzy: Joshua Steyer, Thomas Lilienkamp, Stefan Luther, Ulrich Parlitz
Opublikowane w: Frontiers in Network Physiology, Numer 2, 2023, ISSN 2674-0109
Wydawca: Frontiers
DOI: 10.3389/fnetp.2022.1007585

Evaluating computational efforts and physiological resolution of mathematical models of cardiac tissue

Autorzy: Karoline Horgmo Jæger, James D. Trotter, Xing Cai, Hermenegild Arevalo, Aslak Tveito
Opublikowane w: Scientific Reports, Numer 14, 2024, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-024-67431-w

Editorial: Atrial Fibrillation: Technology for Diagnosis, Monitoring, and Treatment

Autorzy: Omer Berenfeld, Valentina D. A. Corino, Axel Loewe, Juan Pablo Martínez and Jose F. Rodriguez Matas
Opublikowane w: Frontiers in Physiology, 2022, ISSN 1664-042X
Wydawca: Frontiers Research Foundation
DOI: 10.3389/fphys.2022.848096

Resource-Efficient Use of Modern Processor Architectures For Numerically Solving Cardiac Ionic Cell Models

Autorzy: Kristian Gregorius Hustad; Xing Cai
Opublikowane w: Frontiers in Physiology, 2022, ISSN 1664-042X
Wydawca: Frontiers Research Foundation
DOI: 10.3389/fphys.2022.904648

Convergence Analysis of BDDC Preconditioners for Composite DG Discretizations of the Cardiac Cell-By-Cell Model

Autorzy: Ngoc Mai Monica Huynh, Fatemeh Chegini, Luca Franco Pavarino, Martin Weiser, Simone Scacchi
Opublikowane w: SIAM Journal on Scientific Computing, Numer 45, 2023, Strona(/y) A2836-A2857, ISSN 1064-8275
Wydawca: Society for Industrial and Applied Mathematics
DOI: 10.1137/22m1542532

Fibrotic Remodeling during Persistent Atrial Fibrillation: In Silico Investigation of the Role of Calcium for Human Atrial Myofibroblast Electrophysiology

Autorzy: Jorge Sánchez , Beatriz Trenor, Javier Saiz, Olaf Dössel and Axel Loewe
Opublikowane w: Cells, Numer 10, 2021, ISSN 2073-4409
Wydawca: MDPI
DOI: 10.3390/cells10112852

Conference proceedings (2)

Parallel nonlinear solvers in computational cardiac electrophysiology

Autorzy: Nicolas Alejandro BARNAFI; Ngoc Mai Monica HUYNH; Luca Franco PAVARINO; Simone SCACCHI
Opublikowane w: IFAC-PapersOnLine, 2022
Wydawca: Elsevier
DOI: 10.1016/j.ifacol.2022.09.093

Combining Uncore Frequency and Dynamic Power Capping to Improve Power Savings

Autorzy: Amina Guermouche
Opublikowane w: 2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 2022, ISBN 978-1-6654-9748-0
Wydawca: IEEE
DOI: 10.1109/ipdpsw55747.2022.00164